cluster # 573

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Takifugu rubripes
cluster # 573 cluster # 573 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_573#0 length = 397 sequences # 1

consensus_573#1 length = 353 sequences # 1

consensusID : consensus_573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [ACCAGAGGCATCTATTCATATTGGTCGGGGGGGTGAGTGAAACGCCTGGCTGACAATTTTCCTTCATTTATCACTGAGTAGGTGGCAGATCTCTGGAGGCAGGAGAGTTTTTCAGAACAATCTTTGCAGGCTGGGGGCCAAATCTCCAAAGTTTCTTAGAAGAAAAGAAAGCGAGTTGAGGGATCATATAAAAGGCTGCAGATTTATGAAAGCGGGGTTGATCCTCGGCGACGCCAAGGTCAGTGTGACCCCCTCCACCATTGTTCCTTAGACGTGTTTGCTTTGTTTAATAGTCAGCGTCCTTCACTGGACAAAACTCAGGCAATCATATTTAAATCAATTTGATCAGTGGGACAGACTCAATGCTGCTGGGAGGAAAAATAAAACATTTTTTTAT]

[+] EMBL FR0060486            [ACCAGAGGCATCTATTCATATTGGTCGGGGGGGTGAGTGAAACGCCTGGCTGACAATTTTCCTTCATTTATCACTGAGTAGGTGGCAGATCTCTGGAGGCAGGAGAGTTTTTCAGAACAATCTTTGCAGGCTGGGGGCCAAATCTCCAAAGTTTCTTAGAAGAAAAGAAAGCGAGTTGAGGGATCATATAAAAGGCTGCAGATTTATGAAAGCGGGGTTGATCCTCGGCGACGCCAAGGTCAGTGTGACCCCCTCCACCATTGTTCCTTAGACGTGTTTGCTTTGTTTAATAGTCAGCGTCCTTCACTGGACAAAACTCAGGCAATCATATTTAAATCAATTTGATCAGTGGGACAGACTCAATGCTGCTGGGAGGAAAAATAAAACATTTTTTTAT]




>consensus_573#0
ACCAGAGGCATCTATTCATATTGGTCGGGGGGGTGAGTGAAACGCCTGGCTGACAATTTT
CCTTCATTTATCACTGAGTAGGTGGCAGATCTCTGGAGGCAGGAGAGTTTTTCAGAACAA
TCTTTGCAGGCTGGGGGCCAAATCTCCAAAGTTTCTTAGAAGAAAAGAAAGCGAGTTGAG
GGATCATATAAAAGGCTGCAGATTTATGAAAGCGGGGTTGATCCTCGGCGACGCCAAGGT
CAGTGTGACCCCCTCCACCATTGTTCCTTAGACGTGTTTGCTTTGTTTAATAGTCAGCGT
CCTTCACTGGACAAAACTCAGGCAATCATATTTAAATCAATTTGATCAGTGGGACAGACT
CAATGCTGCTGGGAGGAAAAATAAAACATTTTTTTAT

consensusID : consensus_573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [GTTTGCGCCAGTTTCAAGGTGACACTTTCAAATGAAACTGTACTCTAAGTGAAGAATTTGTAGGATAACCAGAGGCATCTATTCATATTGGTCGGGGGGGTGAGTGAAACGCCTGGCTGACAATTTTCCTTCATTTATCACTGAATAGGTGGCAGATCTCTGGAGGCAGGAGAGTTTTTCACACCCATCTTTCCACAAGTGGGAGCCGGACCCCCGGGGAGTGGACCGAGCCACAGAAAAGCAGCGTTTTTTTTTTTTTAGGGAGCGGGGGCCGCGCGGCGAGGGCGCGGCGGTTTCTGCTTAGCAACGAGCGCGCGGGAGGCGGCGGAAGCGCCGCGAGGCTCGCAGGACGC]

[+] EMBL CA333205             [GTTTGCGCCAGTTTCAAGGTGACACTTTCAAATGAAACTGTACTCTAAGTGAAGAATTTGTAGGATAACCAGAGGCATCTATTCATATTGGTCGGGGGGGTGAGTGAAACGCCTGGCTGACAATTTTCCTTCATTTATCACTGAATAGGTGGCAGATCTCTGGAGGCAGGAGAGTTTTTCACACCCATCTTTCCACAAGTGGGAGCCGGACCCCCGGGGAGTGGACCGAGCCACAGAAAAGCAGCGTTTTTTTTTTTTTAGGGAGCGGGGGCCGCGCGGCGAGGGCGCGGCGGTTTCTGCTTAGCAACGAGCGCGCGGGAGGCGGCGGAAGCGCCGCGAGGCTCGCAGGACGC]




>consensus_573#1
GTTTGCGCCAGTTTCAAGGTGACACTTTCAAATGAAACTGTACTCTAAGTGAAGAATTTG
TAGGATAACCAGAGGCATCTATTCATATTGGTCGGGGGGGTGAGTGAAACGCCTGGCTGA
CAATTTTCCTTCATTTATCACTGAATAGGTGGCAGATCTCTGGAGGCAGGAGAGTTTTTC
ACACCCATCTTTCCACAAGTGGGAGCCGGACCCCCGGGGAGTGGACCGAGCCACAGAAAA
GCAGCGTTTTTTTTTTTTTAGGGAGCGGGGGCCGCGCGGCGAGGGCGCGGCGGTTTCTGC
TTAGCAACGAGCGCGCGGGAGGCGGCGGAAGCGCCGCGAGGCTCGCAGGACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_573#0      ------------------------------------------------------------
consensus_573#1      GTTTGCGCCAGTTTCAAGGTGACACTTTCAAATGAAACTGTACTCTAAGTGAAGAATTTG 60
                                                                                 

consensus_573#0      -------ACCAGAGGCATCTATTCATATTGGTCGGGGGGGTGAGTGAAACGCCTGGCTGA 53
consensus_573#1      TAGGATAACCAGAGGCATCTATTCATATTGGTCGGGGGGGTGAGTGAAACGCCTGGCTGA 120
                            *****************************************************

consensus_573#0      CAATTTTCCTTCATTTATCACTGAGTAGGTGGCAGATCTCTGGAGGCAGGAGAGTTTTTC 113
consensus_573#1      CAATTTTCCTTCATTTATCACTGAATAGGTGGCAGATCTCTGGAGGCAGGAGAGTTTTTC 180
                     ************************ ***********************************

consensus_573#0      AGAACAATCTTTGCA-GGCTGGGGGCCAAATCTCCAAAGTTTCTTAGAAGAAAAGAAAGC 172
consensus_573#1      ACACCCATCTTTCCACAAGTGGGAGCCGGACCCCCGGGG-------------AGTGGACC 227
                     * * * ****** **    **** ***  * * **   *             *    * *

consensus_573#0      GAGTTGAGGGATCATATAAAAGGCTGCAGATTTATGAAAGCGGGGTTGATCCTCGGCGAC 232
consensus_573#1      GAGCCACAGAA--AAGCAGCGTTTTTTTTTTTTTAGGGAGCGGGG--GCCGCGCGGCGAG 283
                     ***     * *  *   *      *     ***  *  *******  *   * ****** 

consensus_573#0      GCCAAGGTCAGTGTGACCCCCTCCACCATTGTTCCTTAGACG-TGTTTGCTTTGTTTAAT 291
consensus_573#1      GGCGCGG-CGGTTTCTGCTTAGCAACGAGCGCGCGGGAGGCGGCGGAAGCGCCGCGAGGC 342
                     * *  ** * ** *   *    * ** *  *  *   ** **  *   **   *      

consensus_573#0      AGTCAGCGTCCTTCACTGGACAAAACTCAGGCAATCATATTTAAATCAATTTGATCAGTG 351
consensus_573#1      TCGCAGGACGC------------------------------------------------- 353
                        ***    *                                                 

consensus_573#0      GGACAGACTCAATGCTGCTGGGAGGAAAAATAAAACATTTTTTTAT 397
consensus_573#1      ----------------------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)