|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGATATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTCAAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGTTTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAACAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCTGATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG]
[+] EMBL CA588476 [ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGATATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTCAAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGTTTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAACAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCTGATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG]
consensusID : consensus_615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[GTAGCCATAGCGGCAATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGAGCTGGAGATCGTCATTGGAGATGAACACATCTCGTTCACAACTTCGAAAATCGGTTCCCTCATTGATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGCAGGATCTGAAATGTCTCGTCTTCAGTCTCATTAGTCTGCACTTCAAGATCAAGCCAATCTAAGGGGTCCTCTTCTCTACTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACATTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA]
[+] EMBL CA340952 [GTAGCCATAGCGGCAATATTAAATCAGCGTGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCATAAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGGTATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCACAAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGATGATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGAGCTGGAGATCGTCATTGGAGATGAACACATCTCGTTCACAACTTCGAAAATCGGTTCCCTCATTGATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGCAGGATCTGAAATGTCTCGTCTTCAGTCTCATTAGTCTGCACTTCAAGATCAAGCCAATCTAAGGGGTCCTCTTCTCTACTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACATTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_615#0 ACCCTTTAAGGCGGCGGTAACAACGGCAGTAGTAGCCATAGCGGCA-TATTAAATCAGCG 59
consensus_615#1 -------------------------------GTAGCCATAGCGGCAATATTAAATCAGCG 29
*************** *************
consensus_615#0 TGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCAT 119
consensus_615#1 TGTTCTTTGAACTTAACAATGTCAACAAGTGACTTTTATTTGAGATATTATGTTGGTCAT 89
************************************************************
consensus_615#0 AAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCAGACGGGAAACTGAGG 179
consensus_615#1 AAGGGGAAATTTGGACACGAGTTCCTGGAATTTGAATTTAGACCTGACGGGAAACTGAGG 149
******************************************** ***************
consensus_615#0 TATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCAC 239
consensus_615#1 TATGCCAACAACAGCAACTACAAGAATGACGTGATGATCCGAAAGGAGGCATATGTCCAC 209
************************************************************
consensus_615#0 AAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGAT 299
consensus_615#1 AAAAGTGTGATGGAAGAGCTGAAGAGGATCATCGACGACAGTGAGATCACCAAGGAAGAT 269
************************************************************
consensus_615#0 GATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGGTTGTCCCTATAAATACATGA 359
consensus_615#1 GATGCGCTGTGGCCCCCTCCCGACAGGGTCGGCAGACAGG-----------AGCTGGAGA 318
**************************************** * **
consensus_615#0 TATACAGTGCAAAGAAAAATAGTGTTTTGCATGGTTTCCATAAGAGATCTGTTCTTCTTC 419
consensus_615#1 TCGTCATTGGAGATGAACACA-TCTCGTTCACAACTTCGAAAATCGGTTC--CCTCATTG 375
* ** ** * * ** * * * * * ** *** * ** * * ** **
consensus_615#0 AAGACCAGGAACAGTTTGGTCCTGGATAAAACTGTAATTAATAATGACAGTAGAGAAGGT 479
consensus_615#1 ATGTCAACCAGTCCAAGGACCCTGAAGGCCTGCGTGTCTTCTACTACCTGGTGC-AGGAT 434
* * * * * * **** * ** * ** * * * * * * *
consensus_615#0 TTGCCTTGAGGCCTCTCCAGCAAACATTAAGCTCCCCAAAAAGGCCACCAACCAGCTCAA 539
consensus_615#1 CTGAAATGTCTCGTCTTCAGTCT-CATTAGTCTGCACTTCAAGATCA--AGCCAATCTAA 491
** ** * *** *** ***** ** * * *** ** * *** **
consensus_615#0 CAAGGCATGTGAACCATGATCTTCATTTTGGGACTGTTCATGCTCATTTCTTTTTTTTCT 599
consensus_615#1 GGGGTCCTCTTCTCTA----CTGTAGCTGATGTCTTTGGAGTTTTGCATTTTTATGGACA 547
* * * * * * ** * * * ** * * * * *** * *
consensus_615#0 GATGTTTGTTTTAAACATTTCCCAGTAAAAAGAAATCTTTATTGTATTGCTGG 652
consensus_615#1 TTTGCTTTTGTTGAATTTATTTTATTTGGAATAAA------------------ 582
** ** * ** ** * * * * ** ***
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |