cluster # 626

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Takifugu rubripes
cluster # 626 cluster # 626 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_626#0 length = 570 sequences # 1

consensus_626#1 length = 471 sequences # 1

consensusID : consensus_626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [ACATCATGGGCAAGATCATCTTTTACGAGGAGACGAACTTCCAGGGCCGCAATTATGAGTGCATGAGCGACTGCTCTGACATGTCCTACTACCTGAACAGGTGTCAGTCCTGCAGGGTGGAGAGTGGCTGCTTCATGGTCTATGAGCGTCCCAACTTCATGGGAAACCAGTATTTCATGAGGAGGGGAGAATATAATGACATGCAACGCCTGATTAGCATGGGAATGATTTTTTATTCCATCCGCTCTTGTAGACTCATCCCCCAACACAGAGGTCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCAGTGGTCAGATGAACGAGCTGACTGACGACTGTGACAACATCCAGGACCGCTACCGCATGTCTGACTGCCAGTCCTCTCAGGTGATGGACGGCCACTGGCTGCTGTATGAGCAGCCTCACTTCAGAGGCAGGATGATGTACCTGAGGCCTGGGGAGTACAGGAGCTTCAGGGACCAGGGCATGAGTGGCATGAGGATCATGAGCATGAGGCGCATCACTGATATGTGCTAAAGTTCTGTATTTGATGTCAGTAAATAAA]

[+] EMBL CA341039             [ACATCATGGGCAAGATCATCTTTTACGAGGAGACGAACTTCCAGGGCCGCAATTATGAGTGCATGAGCGACTGCTCTGACATGTCCTACTACCTGAACAGGTGTCAGTCCTGCAGGGTGGAGAGTGGCTGCTTCATGGTCTATGAGCGTCCCAACTTCATGGGAAACCAGTATTTCATGAGGAGGGGAGAATATAATGACATGCAACGCCTGATTAGCATGGGAATGATTTTTTATTCCATCCGCTCTTGTAGACTCATCCCCCAACACAGAGGTCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCAGTGGTCAGATGAACGAGCTGACTGACGACTGTGACAACATCCAGGACCGCTACCGCATGTCTGACTGCCAGTCCTCTCAGGTGATGGACGGCCACTGGCTGCTGTATGAGCAGCCTCACTTCAGAGGCAGGATGATGTACCTGAGGCCTGGGGAGTACAGGAGCTTCAGGGACCAGGGCATGAGTGGCATGAGGATCATGAGCATGAGGCGCATCACTGATATGTGCTAAAGTTCTGTATTTGATGTCAGTAAATAAA]




>consensus_626#0
ACATCATGGGCAAGATCATCTTTTACGAGGAGACGAACTTCCAGGGCCGCAATTATGAGT
GCATGAGCGACTGCTCTGACATGTCCTACTACCTGAACAGGTGTCAGTCCTGCAGGGTGG
AGAGTGGCTGCTTCATGGTCTATGAGCGTCCCAACTTCATGGGAAACCAGTATTTCATGA
GGAGGGGAGAATATAATGACATGCAACGCCTGATTAGCATGGGAATGATTTTTTATTCCA
TCCGCTCTTGTAGACTCATCCCCCAACACAGAGGTCAGTTCAGGATGAAGATCTATGAGA
GGGAGAACTTCAGTGGTCAGATGAACGAGCTGACTGACGACTGTGACAACATCCAGGACC
GCTACCGCATGTCTGACTGCCAGTCCTCTCAGGTGATGGACGGCCACTGGCTGCTGTATG
AGCAGCCTCACTTCAGAGGCAGGATGATGTACCTGAGGCCTGGGGAGTACAGGAGCTTCA
GGGACCAGGGCATGAGTGGCATGAGGATCATGAGCATGAGGCGCATCACTGATATGTGCT
AAAGTTCTGTATTTGATGTCAGTAAATAAA

consensusID : consensus_626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [GGGAAGATCATCTTCTATGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGACCAGCAGCGATTGTGCTGACATGTCCTCCTACCTGAGCAGGTGTCACTCTTGCAGGGTGGAGAGCGGCTGCTTCATGGTCTACGATCGCACTAACTACATGGGAAACCAGTTCTTTGTCAGGAGGGGAGAGTACTCTGACTATCAGCATATGGGCATGAGTGACTGCATCAGGTCTTGTCGCATGATCCCCATGCACAGAGGCCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCAGTGGTCAGATGAACGAGCTGACTGACGACTGTGACAACATGCAGGACCGCTACCGTATGTCTGATTGCATGTCCTGCCAGGTGATGGACGGCCACTGGCTGCTGTATGAGCAGCCCCACTTCAGAGGCAGGATGATGTACCTGAGGCCTTGGGAGTACAAGAACTTCAGAGATCTGGGC]

[+] EMBL FR0057759            [GGGAAGATCATCTTCTATGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGACCAGCAGCGATTGTGCTGACATGTCCTCCTACCTGAGCAGGTGTCACTCTTGCAGGGTGGAGAGCGGCTGCTTCATGGTCTACGATCGCACTAACTACATGGGAAACCAGTTCTTTGTCAGGAGGGGAGAGTACTCTGACTATCAGCATATGGGCATGAGTGACTGCATCAGGTCTTGTCGCATGATCCCCATGCACAGAGGCCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCAGTGGTCAGATGAACGAGCTGACTGACGACTGTGACAACATGCAGGACCGCTACCGTATGTCTGATTGCATGTCCTGCCAGGTGATGGACGGCCACTGGCTGCTGTATGAGCAGCCCCACTTCAGAGGCAGGATGATGTACCTGAGGCCTTGGGAGTACAAGAACTTCAGAGATCTGGGC]




>consensus_626#1
GGGAAGATCATCTTCTATGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGACCAGCAGC
GATTGTGCTGACATGTCCTCCTACCTGAGCAGGTGTCACTCTTGCAGGGTGGAGAGCGGC
TGCTTCATGGTCTACGATCGCACTAACTACATGGGAAACCAGTTCTTTGTCAGGAGGGGA
GAGTACTCTGACTATCAGCATATGGGCATGAGTGACTGCATCAGGTCTTGTCGCATGATC
CCCATGCACAGAGGCCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCAGTGGTCAG
ATGAACGAGCTGACTGACGACTGTGACAACATGCAGGACCGCTACCGTATGTCTGATTGC
ATGTCCTGCCAGGTGATGGACGGCCACTGGCTGCTGTATGAGCAGCCCCACTTCAGAGGC
AGGATGATGTACCTGAGGCCTTGGGAGTACAAGAACTTCAGAGATCTGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_626#0      ACATCATGGGCAAGATCATCTTTTACGAGGAGACGAACTTCCAGGGCCGCAATTATGAGT 60
consensus_626#1      --------GGGAAGATCATCTTCTATGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGA 52
                             ** *********** ** ***** * ************ **    ****** 

consensus_626#0      GCATGAGCGACTGCTCTGACATGTCCTACTACCTGAACAGGTGTCAGTCCTGCAGGGTGG 120
consensus_626#1      CCAGCAGCGATTGTGCTGACATGTCCTCCTACCTGAGCAGGTGTCACTCTTGCAGGGTGG 112
                      **  ***** **  ************ ******** ********* ** **********

consensus_626#0      AGAGTGGCTGCTTCATGGTCTATGAGCGTCCCAACTTCATGGGAAACCAGTATTTCATGA 180
consensus_626#1      AGAGCGGCTGCTTCATGGTCTACGATCGCACTAACTACATGGGAAACCAGTTCTTTGTCA 172
                     **** ***************** ** **  * **** **************  **  * *

consensus_626#0      GGAGGGGAGAATATAATGACATGCAACGCCTGATTAGCATGGGAATGATTTTTTATTCCA 240
consensus_626#1      GGAGGGGAGAGTACTCTGACTATCAGCATATGG---GCATGAG---------TGACTGCA 220
                     ********** **   ****   ** *   **    ***** *         * * * **

consensus_626#0      TCCGCTCTTGTAGACTCATCCCCCAACACAGAGGTCAGTTCAGGATGAAGATCTATGAGA 300
consensus_626#1      TCAGGTCTTGTCGCATGATCCCCATGCACAGAGGCCAGTTCAGGATGAAGATCTATGAGA 280
                     ** * ****** *  * ******   ******** *************************

consensus_626#0      GGGAGAACTTCAGTGGTCAGATGAACGAGCTGACTGACGACTGTGACAACATCCAGGACC 360
consensus_626#1      GGGAGAACTTCAGTGGTCAGATGAACGAGCTGACTGACGACTGTGACAACATGCAGGACC 340
                     **************************************************** *******

consensus_626#0      GCTACCGCATGTCTGACTGCCAGTCCTCTCAGGTGATGGACGGCCACTGGCTGCTGTATG 420
consensus_626#1      GCTACCGTATGTCTGATTGCATGTCCTGCCAGGTGATGGACGGCCACTGGCTGCTGTATG 400
                     ******* ******** ***  *****  *******************************

consensus_626#0      AGCAGCCTCACTTCAGAGGCAGGATGATGTACCTGAGGCCTGGGGAGTACAGGAGCTTCA 480
consensus_626#1      AGCAGCCCCACTTCAGAGGCAGGATGATGTACCTGAGGCCTTGGGAGTACAAGAACTTCA 460
                     ******* ********************************* ********* ** *****

consensus_626#0      GGGACCAGGGCATGAGTGGCATGAGGATCATGAGCATGAGGCGCATCACTGATATGTGCT 540
consensus_626#1      GAGATCTGGGC------------------------------------------------- 471
                     * ** * ****                                                 

consensus_626#0      AAAGTTCTGTATTTGATGTCAGTAAATAAA 570
consensus_626#1      ------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)