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Takifugu rubripes
cluster # 643 cluster # 643       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_643#0 length = 608 sequences # 1  
 consensus_643#1 length = 246 sequences # 1  
consensusID : consensus_643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence 
                              [GACGTTTAATAGCCTCCAGCACCACCACCAAACCCGGTGACCCAACGTGAAACTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACTACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGAGCCCACAGATGGTCCTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCAGTGAGCCTACAGATGGTACCGGTTTCACGACCACTCCTTCCAGGACCACGAACCACCCCAGTTTGTCCGCCACCTTGTCCTCGACTCAAGACAGTAATACAACCGCTGAACCCAGTCCAACCAGTAACGGAACTGTCCCTACGGCCAACACAGCTCTCCCTCTAACAGTGGTTGTGCCATCGGGGGGCTACGGATCAAACGACATGGTGGCGCTGGGTGCAACCCTGGGCGTCCTGCTGTGCGTCTGCCTGGCTATAATTGCCTTTCTCATCATCCATATTCGAAGGGACAGGGGGGACTGGAAGAAGCTCCATGAAATCAACCAGTTTAAAAG]

[+] EMBL CA588106             [GACGTTTAATAGCCTCCAGCACCACCACCAAACCCGGTGACCCAACGTGAAACTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACTACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGAGCCCACAGATGGTCCTGGTTTGACGACTACTCCCTCCAGCACCACCACCAAACCCAGTGAGCCTACAGATGGTACCGGTTTCACGACCACTCCTTCCAGGACCACGAACCACCCCAGTTTGTCCGCCACCTTGTCCTCGACTCAAGACAGTAATACAACCGCTGAACCCAGTCCAACCAGTAACGGAACTGTCCCTACGGCCAACACAGCTCTCCCTCTAACAGTGGTTGTGCCATCGGGGGGCTACGGATCAAACGACATGGTGGCGCTGGGTGCAACCCTGGGCGTCCTGCTGTGCGTCTGCCTGGCTATAATTGCCTTTCTCATCATCCATATTCGAAGGGACAGGGGGGACTGGAAGAAGCTCCATGAAATCAACCAGTTTAAAAG]




>consensus_643#0
GACGTTTAATAGCCTCCAGCACCACCACCAAACCCGGTGACCCAACGTGAAACTGGTTTG
ACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTG
ACTACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTTG
ACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGAGCCCACAGATGGTCCTGGTTTG
ACGACTACTCCCTCCAGCACCACCACCAAACCCAGTGAGCCTACAGATGGTACCGGTTTC
ACGACCACTCCTTCCAGGACCACGAACCACCCCAGTTTGTCCGCCACCTTGTCCTCGACT
CAAGACAGTAATACAACCGCTGAACCCAGTCCAACCAGTAACGGAACTGTCCCTACGGCC
AACACAGCTCTCCCTCTAACAGTGGTTGTGCCATCGGGGGGCTACGGATCAAACGACATG
GTGGCGCTGGGTGCAACCCTGGGCGTCCTGCTGTGCGTCTGCCTGGCTATAATTGCCTTT
CTCATCATCCATATTCGAAGGGACAGGGGGGACTGGAAGAAGCTCCATGAAATCAACCAG
TTTAAAAG

consensusID : consensus_643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence 
                              [AAATCAGTTTCCGAAAACCACCACTGTTCCACCGGGGACCACAAAATACAAGACCACAGATCACGTTTCCCCAACCAGCCCCAGTAGTTCCACGGACGTCACCGGCTTAACGACTACCCCGTCAGAGACCACCACCAAACCCGGTGACCGCACAGGTGGTCCTGGTTTGACAACTACTCCCTCCAGCACCACCACCGAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCTCTCCAG]

[+] EMBL FR0059628            [AAATCAGTTTCCGAAAACCACCACTGTTCCACCGGGGACCACAAAATACAAGACCACAGATCACGTTTCCCCAACCAGCCCCAGTAGTTCCACGGACGTCACCGGCTTAACGACTACCCCGTCAGAGACCACCACCAAACCCGGTGACCGCACAGGTGGTCCTGGTTTGACAACTACTCCCTCCAGCACCACCACCGAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCTCTCCAG]




>consensus_643#1
AAATCAGTTTCCGAAAACCACCACTGTTCCACCGGGGACCACAAAATACAAGACCACAGA
TCACGTTTCCCCAACCAGCCCCAGTAGTTCCACGGACGTCACCGGCTTAACGACTACCCC
GTCAGAGACCACCACCAAACCCGGTGACCGCACAGGTGGTCCTGGTTTGACAACTACTCC
CTCCAGCACCACCACCGAACCCGGTGACCCCACAGGTGGTCCTGGTTTGACGACTACTCT
CTCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_643#0      GACGTTTAATAGCCTCC-AGCACCACCACCAAACCCGGTGACCCAACGTGAAACTGGTTT 59
consensus_643#1      -----AAATCAGTTTCCGAAAACCACCACTGTTCCACCGGGGACCACAAAATACAAGACC 55
                            *  **  *** *  ********    **    *   * **   * **  *   

consensus_643#0      GACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTT 119
consensus_643#1      ACAGATCACGTTTCCC-------CAACCAGCCCCAGTAGTTCCACGGACGTCACCGGCTT 108
                        **  **     **       * ****  *** **    **** *  *   * ** **

consensus_643#0      GACTACTACTCCCTCCAGCACCACCACCAAACCCGGTGACCCCACAGGTGGTCCTGGTTT 179
consensus_643#1      AACGACTACCCCGTCAGAGACCACCACCAAACCCGGTGACCGCACAGGTGGTCCTGGTTT 168
                      ** ***** ** **    ********************** ******************

consensus_643#0      GACGACTACTCCCTCCAGCACCACCACCAAACCCGGTGAGCCCACAGATGGTCCTGGTTT 239
consensus_643#1      GACAACTACTCCCTCCAGCACCACCACCGAACCCGGTGACCCCACAGGTGGTCCTGGTTT 228
                     *** ************************ ********** ******* ************

consensus_643#0      GACGACTACTCCCTCCAGCACCACCACCAAACCCAGTGAGCCTACAGATGGTACCGGTTT 299
consensus_643#1      GACGACTACTCTCTCCAG------------------------------------------ 246
                     *********** ******                                          

consensus_643#0      CACGACCACTCCTTCCAGGACCACGAACCACCCCAGTTTGTCCGCCACCTTGTCCTCGAC 359
consensus_643#1      ------------------------------------------------------------
                                                                                 

consensus_643#0      TCAAGACAGTAATACAACCGCTGAACCCAGTCCAACCAGTAACGGAACTGTCCCTACGGC 419
consensus_643#1      ------------------------------------------------------------
                                                                                 

consensus_643#0      CAACACAGCTCTCCCTCTAACAGTGGTTGTGCCATCGGGGGGCTACGGATCAAACGACAT 479
consensus_643#1      ------------------------------------------------------------
                                                                                 

consensus_643#0      GGTGGCGCTGGGTGCAACCCTGGGCGTCCTGCTGTGCGTCTGCCTGGCTATAATTGCCTT 539
consensus_643#1      ------------------------------------------------------------
                                                                                 

consensus_643#0      TCTCATCATCCATATTCGAAGGGACAGGGGGGACTGGAAGAAGCTCCATGAAATCAACCA 599
consensus_643#1      ------------------------------------------------------------
                                                                                 

consensus_643#0      GTTTAAAAG 608
consensus_643#1      ---------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)