cluster # 697

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Takifugu rubripes
cluster # 697 cluster # 697 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_697#0 length = 353 sequences # 1

consensus_697#1 length = 323 sequences # 1

consensusID : consensus_697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [AGTCGTCAGATTTTTCGTGATGGGAAACAAGCGGAAAGGGGGGCTGCCTGAAACTCTTTCCGTGTGACTCACCCCTGCACATTTCTAAAGGCGAAACTTAAGTTTTAATCGGGTTTTTTGTTTCAGCTCGGAGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCTGGGCCTCCTCCTGACAGGTGCTTTGCTCAGCAAAGACAGGTTACAGCATGAAGGCATCTCATGGGGAACCACAGGCCTGCATGTCTATTTCTTAACCGCTGCATCTGACTGAATGTTTGACATGCCAGTTATTCAGCACTTGTATTTTAACAGACACATTATTGTGC]

[+] EMBL FR0061379            [AGTCGTCAGATTTTTCGTGATGGGAAACAAGCGGAAAGGGGGGCTGCCTGAAACTCTTTCCGTGTGACTCACCCCTGCACATTTCTAAAGGCGAAACTTAAGTTTTAATCGGGTTTTTTGTTTCAGCTCGGAGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCTGGGCCTCCTCCTGACAGGTGCTTTGCTCAGCAAAGACAGGTTACAGCATGAAGGCATCTCATGGGGAACCACAGGCCTGCATGTCTATTTCTTAACCGCTGCATCTGACTGAATGTTTGACATGCCAGTTATTCAGCACTTGTATTTTAACAGACACATTATTGTGC]




>consensus_697#0
AGTCGTCAGATTTTTCGTGATGGGAAACAAGCGGAAAGGGGGGCTGCCTGAAACTCTTTC
CGTGTGACTCACCCCTGCACATTTCTAAAGGCGAAACTTAAGTTTTAATCGGGTTTTTTG
TTTCAGCTCGGAGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCA
GCTGCTGGGCCTCCTCCTGACAGGTGCTTTGCTCAGCAAAGACAGGTTACAGCATGAAGG
CATCTCATGGGGAACCACAGGCCTGCATGTCTATTTCTTAACCGCTGCATCTGACTGAAT
GTTTGACATGCCAGTTATTCAGCACTTGTATTTTAACAGACACATTATTGTGC

consensusID : consensus_697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [AGGGCATGGGCAGAACGCCATGAAAGCTTCAGTGGCTCGCACCGACGGACGCTCACACAGCTCGGTGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCTTGGCCTCCTCCTGACAGGTCAGGCCTCCTCTAATCACACCTCCACTACGCCGTCTCCTCTCGCCTCAACCACACATGTGCAGCCTCAAGCTACGTACTACTTTGTTGACATAACTGTGACCGCCGCTGTAAAGAAAAATGAATCTGAGATCAAGGCCCTGCTTCATGGAGGGCATTCCAAAAACAACCCTGGAGAGCTGCCCT]

[+] EMBL FR0061138            [AGGGCATGGGCAGAACGCCATGAAAGCTTCAGTGGCTCGCACCGACGGACGCTCACACAGCTCGGTGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCTTGGCCTCCTCCTGACAGGTCAGGCCTCCTCTAATCACACCTCCACTACGCCGTCTCCTCTCGCCTCAACCACACATGTGCAGCCTCAAGCTACGTACTACTTTGTTGACATAACTGTGACCGCCGCTGTAAAGAAAAATGAATCTGAGATCAAGGCCCTGCTTCATGGAGGGCATTCCAAAAACAACCCTGGAGAGCTGCCCT]




>consensus_697#1
AGGGCATGGGCAGAACGCCATGAAAGCTTCAGTGGCTCGCACCGACGGACGCTCACACAG
CTCGGTGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCT
TGGCCTCCTCCTGACAGGTCAGGCCTCCTCTAATCACACCTCCACTACGCCGTCTCCTCT
CGCCTCAACCACACATGTGCAGCCTCAAGCTACGTACTACTTTGTTGACATAACTGTGAC
CGCCGCTGTAAAGAAAAATGAATCTGAGATCAAGGCCCTGCTTCATGGAGGGCATTCCAA
AAACAACCCTGGAGAGCTGCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_697#0      AGTCGTCAGATTTTTCGTGATGGGAAACAAGCGGAAAGGGGGGCTGCCTGAAACTCTTTC 60
consensus_697#1      ------------------------------------------------------------
                                                                                 

consensus_697#0      CGTGTGACTCACCCCTGCACATTTCTAAAGGCGAAACTTAAGTTTTAATCGG-GTTTTTT 119
consensus_697#1      -------AGGGCATGGGCAGAACGCCATGAAAGCTTCAGTGGCTCGCACCGACGGACGCT 53
                                *    *** *   * *     *   *    * *   * **  *     *

consensus_697#0      GTTTCAGCTCGGAGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTC 179
consensus_697#1      CACACAGCTCGGTGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTC 113
                         ******** ***********************************************

consensus_697#0      AGCTGCTGGGCCTCCTCCTGACAGGTG----CTTTGCTCAGCAAAGACAGGTTACAGCAT 235
consensus_697#1      AGCTGCTTGGCCTCCTCCTGACAGGTCAGGCCTCCTCTAATCACACCTCCACTACGCCGT 173
                     ******* ******************     **   ** * ** *       ***  * *

consensus_697#0      GAA----------GGCATCTCATGGGGAACCACAGGCCTGCATGTCTATTTCTTAACC-- 283
consensus_697#1      CTCCTCTCGCCTCAACCACACATGTGCAGCCTCAAGC-TACGTACTACTTTGTTGACATA 232
                                    *  * **** * * ** ** ** * * *     *** ** **   

consensus_697#0      GCTGCATCTG--ACTG-AATGTTTGACATGCCAGTTATTCAGCACTTGTATTTTAACAGA 340
consensus_697#1      ACTGTGACCGCCGCTGTAAAGAAAAATGAATCTGAGATCAAGGCCCTGCTTCATGGAGGG 292
                      ***   * *   *** ** *    *     * *  **  **  * **  *  *    * 

consensus_697#0      CACATTATTGTGC------------------ 353
consensus_697#1      CATTCCAAAAACAACCCTGGAGAGCTGCCCT 323
                     **    *

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)