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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 713 cluster # 713       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_713#0 length = 399 sequences # 1  
 consensus_713#1 length = 325 sequences # 1  
consensusID : consensus_713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence 
                              [ATGTCCTCAAAGAGCCCTGTTCGGCAAATGTGTGGTCTGGACACCTGCTACCAGTGGGAAACCTGCGCCGCATCTAAGAAGTGTGAGTGCAAATCTGCAAGGAACTGTGAGCGTGATGAGCAGCAAATGTTCTGTATTAAGCTCACCAGGTCTCCGAGGGCTCGAAGCATGGACCTTTGCTCCATGGCTGCACTCAAGTGTGCAAACTATGATTTTGAGATTCTCAGCGAAGGTGTCTGTGAGTCCAGATGATAATTTTTATATCTACAACTGCTTTTAATGAAACAGGTTTAAAAGTGCCCTCATGTATTGATACTCTTCAGCCAAATGGTGATGGATAAAAAGGTCTTTTCATGGACTAATAAATAAAAATGATCTCAAGAAAAAAAAAAAAAAAAA]

[+] EMBL FR0056960            [ATGTCCTCAAAGAGCCCTGTTCGGCAAATGTGTGGTCTGGACACCTGCTACCAGTGGGAAACCTGCGCCGCATCTAAGAAGTGTGAGTGCAAATCTGCAAGGAACTGTGAGCGTGATGAGCAGCAAATGTTCTGTATTAAGCTCACCAGGTCTCCGAGGGCTCGAAGCATGGACCTTTGCTCCATGGCTGCACTCAAGTGTGCAAACTATGATTTTGAGATTCTCAGCGAAGGTGTCTGTGAGTCCAGATGATAATTTTTATATCTACAACTGCTTTTAATGAAACAGGTTTAAAAGTGCCCTCATGTATTGATACTCTTCAGCCAAATGGTGATGGATAAAAAGGTCTTTTCATGGACTAATAAATAAAAATGATCTCAAGAAAAAAAAAAAAAAAAA]




>consensus_713#0
ATGTCCTCAAAGAGCCCTGTTCGGCAAATGTGTGGTCTGGACACCTGCTACCAGTGGGAA
ACCTGCGCCGCATCTAAGAAGTGTGAGTGCAAATCTGCAAGGAACTGTGAGCGTGATGAG
CAGCAAATGTTCTGTATTAAGCTCACCAGGTCTCCGAGGGCTCGAAGCATGGACCTTTGC
TCCATGGCTGCACTCAAGTGTGCAAACTATGATTTTGAGATTCTCAGCGAAGGTGTCTGT
GAGTCCAGATGATAATTTTTATATCTACAACTGCTTTTAATGAAACAGGTTTAAAAGTGC
CCTCATGTATTGATACTCTTCAGCCAAATGGTGATGGATAAAAAGGTCTTTTCATGGACT
AATAAATAAAAATGATCTCAAGAAAAAAAAAAAAAAAAA

consensusID : consensus_713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence 
                              [CTATTCTAGATTATCCTGTGCATTTCTGTTTTTAGGTGTTCTGCTTTGTGTGTATAAGAGAACTTGGTGTGCAGTGATAATGACATGAGCGGATGTGTGAATAGTTCCCAGCCAGAGGCCCTCTGCATCCTGAACACAGATGTTGGTGTGGCTGTGTCAGTGTCCCTCTGCACCTTCCACGTCGGGCGCTGCCATGGTGATCCGCTCTTTTTCATCAGCGAGGGGGTGTGTGATCCAGCCGTATCTGGCAGACTGGAGTGGATCAAATTCAGAGCTCAAATGTCCTCAAAGAGCCCTGTTCGGGAAATGTGTGGTCCGGGAACCT]

[+] EMBL FR0056847            [CTATTCTAGATTATCCTGTGCATTTCTGTTTTTAGGTGTTCTGCTTTGTGTGTATAAGAGAACTTGGTGTGCAGTGATAATGACATGAGCGGATGTGTGAATAGTTCCCAGCCAGAGGCCCTCTGCATCCTGAACACAGATGTTGGTGTGGCTGTGTCAGTGTCCCTCTGCACCTTCCACGTCGGGCGCTGCCATGGTGATCCGCTCTTTTTCATCAGCGAGGGGGTGTGTGATCCAGCCGTATCTGGCAGACTGGAGTGGATCAAATTCAGAGCTCAAATGTCCTCAAAGAGCCCTGTTCGGGAAATGTGTGGTCCGGGAACCT]




>consensus_713#1
CTATTCTAGATTATCCTGTGCATTTCTGTTTTTAGGTGTTCTGCTTTGTGTGTATAAGAG
AACTTGGTGTGCAGTGATAATGACATGAGCGGATGTGTGAATAGTTCCCAGCCAGAGGCC
CTCTGCATCCTGAACACAGATGTTGGTGTGGCTGTGTCAGTGTCCCTCTGCACCTTCCAC
GTCGGGCGCTGCCATGGTGATCCGCTCTTTTTCATCAGCGAGGGGGTGTGTGATCCAGCC
GTATCTGGCAGACTGGAGTGGATCAAATTCAGAGCTCAAATGTCCTCAAAGAGCCCTGTT
CGGGAAATGTGTGGTCCGGGAACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_713#0      ATGTCCTCAAAGAGCCCTGTTCGGCAAATGTGTGGTCTGGACACCTGCTACCAGTGGGAA 60
consensus_713#1      CTATTCT-AGATTATCCTGT---GCATTTCTGTTTTTAGGTGTTCTGCTTTGTGTGTATA 56
                      * * ** * *    *****   ***  * ***  *  **    *****    ***   *

consensus_713#0      ACCTGCGCCGCATCTAAGAAGTGTGAGTGCAAATCTGCAAGGAACTGTGAGC-GTGATGA 119
consensus_713#1      A---GAGAACTTGGTGTGCAGTGATAATG---ACATGAGCGGATGTGTGAATAGTTCCCA 110
                     *   * *       *  * ****  * **   *  **   ***  *****   **    *

consensus_713#0      GCAGCAAATGTTCTGTATTAAGCTCACCAGGTCTCCGAGGGCTCGAAGCA-TGGACCTTT 178
consensus_713#1      GCCAGAGGCCCTCTGCATCCTGAACAC-AGATGTTGGTGTGGCTGTGTCAGTGTCCCTCT 169
                     **   *     **** **   *  *** ** * *  * * *   *   ** **  *** *

consensus_713#0      GCTCCATGGCTGCACTCAAGTGTGCAAACTATGATTTTGAGATTCTCA---GCGAAGGTG 235
consensus_713#1      GCACCTT--CCACG-TCGGGCGCTGCCATGGTGATCCGCTCTTTTTCATCAGCGAGGGGG 226
                     ** ** *  *  *  **  * *     *   ****       ** ***   **** ** *

consensus_713#0      TCTGTGAGTCCAGATGATAATTTTTATATCTACAACTGCTTTTAATGAAACAGGTTTAAA 295
consensus_713#1      TGTGTGA-TCCAGCCG-TATCTGGCAGA-CTGGAGTGGATCAAATTCAGA---GCTCAAA 280
                     * ***** *****  * **  *   * * **  *   * *   * * * *   * * ***

consensus_713#0      AGTGCCCTCATGTATTGATACTCTTCAGCCAAATGGTGATGGATAAAAAGGTCTTTTCAT 355
consensus_713#1      --TGTCCTCAAAGAGCCCTGTTCGGGAAATGTGTGGTCCGGGAACCT------------- 325
                       ** *****   *    *  **   *      ****   ***                 

consensus_713#0      GGACTAATAAATAAAAATGATCTCAAGAAAAAAAAAAAAAAAAA 399
consensus_713#1      --------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)