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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence
[TCCTCAAAGTAGCTCCTCTGTGTCGGGGCTCCTCAGCAGCACCCTTCAGGAGCCAGAGATCTTAGCTGTGTCAGACTGTGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGCGGGAGGCTCATGAGAGGGAGGTGGAAGGCTGGCAGGTCAAGATCCAGGAGCTGTCCAATAAGAAGGGCTGTGACACACGGCGAATGGAGGAGCTGTTCTCCAAGAACCAGCAGATGAAAGAGCAACAGCGGCTGCTGACTGAGAACATCAAGACTCTGGAGAACAGGTTGAGGGCCGGACTCTGTGACAGGTGCTCCGTCACGCAGGAGTTCGCCAAGAGGAGACAGCAGGATTTCGAAGCCTCCCACCTTCAGAGTCTGCAGCACATTTCGCTCATGGCAGGAGAAATGAACACCTTAAAAAAGGAAAACAAGAGACTGAAAGAGGAGAACAAAGTGCTGAAAGCCGCCCTGCATGAACAATCCTCCAACACCTCCGAGCTGACACTCACCAGCTCCCCCGACCTCTCACCTTCCTCTGGACCTGTGCCCCTCATCGCTACGGCAACCAGCAAACCCAGCAAGCAGCCACCAGATGGCGAGGTGGACCACAGGAAGGACGAACTGGAGCAGCGACAGTGGAAAAGCAGCAGCCGCCGATACTTTGAGTCGTACAAACCTCTGCCGATGCCTCCAAACAGGAAGTGCGATGCTAGTTTGTCCT]
[+] EMBL CA588567 [TCCTCAAAGTAGCTCCTCTGTGTCGGGGCTCCTCAGCAGCACCCTTCAGGAGCCAGAGATCTTAGCTGTGTCAGACTGTGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGCGGGAGGCTCATGAGAGGGAGGTGGAAGGCTGGCAGGTCAAGATCCAGGAGCTGTCCAATAAGAAGGGCTGTGACACACGGCGAATGGAGGAGCTGTTCTCCAAGAACCAGCAGATGAAAGAGCAACAGCGGCTGCTGACTGAGAACATCAAGACTCTGGAGAACAGGTTGAGGGCCGGACTCTGTGACAGGTGCTCCGTCACGCAGGAGTTCGCCAAGAGGAGACAGCAGGATTTCGAAGCCTCCCACCTTCAGAGTCTGCAGCACATTTCGCTCATGGCAGGAGAAATGAACACCTTAAAAAAGGAAAACAAGAGACTGAAAGAGGAGAACAAAGTGCTGAAAGCCGCCCTGCATGAACAATCCTCCAACACCTCCGAGCTGACACTCACCAGCTCCCCCGACCTCTCACCTTCCTCTGGACCTGTGCCCCTCATCGCTACGGCAACCAGCAAACCCAGCAAGCAGCCACCAGATGGCGAGGTGGACCACAGGAAGGACGAACTGGAGCAGCGACAGTGGAAAAGCAGCAGCCGCCGATACTTTGAGTCGTACAAACCTCTGCCGATGCCTCCAAACAGGAAGTGCGATGCTAGTTTGTCCT]
consensusID : consensus_714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence
[CGGACCAGGTCAACCAGTTTGGGGCATCTCAATTTTAAAANCTAATTTTCTCACACAACAATATNAAGGTTTGAGACAACAAACAGTCTCAAGAAGTTGAATCACCTTTAGCATCAGCAGATTCACCTGTGCTCACCTGCCAACCTCAGCTGTGTGTTACAGATGTGTGTGTCTGTGCCCAGACTGGGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGGGGGAGG]
[+] EMBL FR0059643 [CGGACCAGGTCAACCAGTTTGGGGCATCTCAATTTTAAAANCTAATTTTCTCACACAACAATATNAAGGTTTGAGACAACAAACAGTCTCAAGAAGTTGAATCACCTTTAGCATCAGCAGATTCACCTGTGCTCACCTGCCAACCTCAGCTGTGTGTTACAGATGTGTGTGTCTGTGCCCAGACTGGGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGGGGGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_714#0 TCCTCAAAGTAGCTCCTCTGTGTCGGGGCTCCTCAGCAGCACCCTTCAGGAGCCAGAGAT 60
consensus_714#1 ------------------------------------------------------------
consensus_714#0 CTTAGCTGTGTCAGACTGTGATGGAGTGCTTCAACAGTCTTCTGCTCAAGGTGCGGGAGG 120
consensus_714#1 ------------------------------------------------------------
consensus_714#0 CTCATGAGAGGGAGGTGGAAGGCTGGCAGGTCAAGATCCAGGAGCTGTCCAATAAGAAGG 180
consensus_714#1 ------------------------------------------------------------
consensus_714#0 GCTGTGACACACGGCGAATGGAGGAGCTGTTCTCCAAGAACCAGCAGATGAAAGAGCAAC 240
consensus_714#1 ------------------------------------------------------------
consensus_714#0 AGCGGCTGCTGACTGAGAACATCAAGACTCTGGAGAACAGGTTGAGGGCCGGACTCTGTG 300
consensus_714#1 ------------------------------------------------------------
consensus_714#0 ACAGGTGCTCCGTCACGCAGGAGTTCGCCAAGAGGAGACAGCAGGATTTCGAAGCCTCCC 360
consensus_714#1 -------------------------------------------------CGGACCAGGTC 11
** * * *
consensus_714#0 ACCTTCAGAGTCTGCAGCACATTTCGCTCATGGCAGGAGAAATGAACACCTTAAAAAAGG 420
consensus_714#1 AACC----AGTTTGGGGC--ATCTCAATTTT------AAAANCTAATTTTCTCACACAAC 59
* * *** ** ** ** ** * * * ** ** * * * *
consensus_714#0 AAAACAAGAGACTGAAAGAGGAGAACAAAGTGCTGAAAGCCGCCCTGCATGAACAATCCT 480
consensus_714#1 AATATNAAGGTTTGAGACAACA-AACAGTCT-CAAGAAGTTGAATCACCTTTAGCATCAG 117
** * * * *** * * * **** * * *** * * * * ***
consensus_714#0 CCAACACCTCCGAGCTGACACTCACCAGCTCCCCCGACCTCTCACCTTCCTCTGGACCTG 540
consensus_714#1 CAGATTCACCTGTGCT--CACCTGCCAACCTCAGCTGTGTGTTACAGATGTGTGTGTCTG 175
* * * * * *** *** *** * * * * * ** * ** ***
consensus_714#0 TGCCCCTCATCGCTACGGCAACCAGCAAACCCAGCAAGCAGCCACCAGATGGCGAGGTGG 600
consensus_714#1 TGCCCAG-ACTGGGATGGAGTGCTTCAA---CAGTCTTCTGCT-CAAGGTGGGGGAGG-- 228
***** * * * ** * *** *** * ** * ** *** * *
consensus_714#0 ACCACAGGAAGGACGAACTGGAGCAGCGACAGTGGAAAAGCAGCAGCCGCCGATACTTTG 660
consensus_714#1 ------------------------------------------------------------
consensus_714#0 AGTCGTACAAACCTCTGCCGATGCCTCCAAACAGGAAGTGCGATGCTAGTTTGTCCT 717
consensus_714#1 ---------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |