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Takifugu rubripes
cluster # 768 cluster # 768       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_768#0 length = 517 sequences # 1  
 consensus_768#1 length = 440 sequences # 1  
consensusID : consensus_768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence 
                              [TGACAGTCGGACACACATTATTCTAAGCACATCTTCAACATGAAGCGACCAAAGTTGAAGAAGGCCAGTAAGCGGATGTCATGTTCGAAACGTTATAAGATCCAGAAAAAGGTTCGGGAACACCACAAAAAACTGAGAAAAGAGGCGAAAAAGAAAGGAGTGAGCAAGCGGGTGAAGAAGGACCCTGGCGTGCCGAGCATTGCTCCCTTCAAAGAAGAGGTCCTGCGAGAGGCCGAGCAAAGGAGGCAACAGATCGAGGAAGAAAAACAACGGAACAAAGAAGCTAAAAAAGAACAGAGAGCCCAGAAGAGAAAACAAACTAAAGAGCCTGGAAGCAAAGAAACTGAGCCCAGTGCCAAAAAGGCTCGGCAGGTTCAAAACTCCACCAGTCCTCCGTTGTTTTGATTTGTTGTGCTTTTATTGTCTCACCTTCATGTTTGTTGGGTGTGTTTCCACAGGTGGAAAGGCAGAAGAATTCAGAAAATCAGAAAGCTGCCAACAGGAACTCCAATAAGCA]

[+] EMBL CA589284             [TGACAGTCGGACACACATTATTCTAAGCACATCTTCAACATGAAGCGACCAAAGTTGAAGAAGGCCAGTAAGCGGATGTCATGTTCGAAACGTTATAAGATCCAGAAAAAGGTTCGGGAACACCACAAAAAACTGAGAAAAGAGGCGAAAAAGAAAGGAGTGAGCAAGCGGGTGAAGAAGGACCCTGGCGTGCCGAGCATTGCTCCCTTCAAAGAAGAGGTCCTGCGAGAGGCCGAGCAAAGGAGGCAACAGATCGAGGAAGAAAAACAACGGAACAAAGAAGCTAAAAAAGAACAGAGAGCCCAGAAGAGAAAACAAACTAAAGAGCCTGGAAGCAAAGAAACTGAGCCCAGTGCCAAAAAGGCTCGGCAGGTTCAAAACTCCACCAGTCCTCCGTTGTTTTGATTTGTTGTGCTTTTATTGTCTCACCTTCATGTTTGTTGGGTGTGTTTCCACAGGTGGAAAGGCAGAAGAATTCAGAAAATCAGAAAGCTGCCAACAGGAACTCCAATAAGCA]




>consensus_768#0
TGACAGTCGGACACACATTATTCTAAGCACATCTTCAACATGAAGCGACCAAAGTTGAAG
AAGGCCAGTAAGCGGATGTCATGTTCGAAACGTTATAAGATCCAGAAAAAGGTTCGGGAA
CACCACAAAAAACTGAGAAAAGAGGCGAAAAAGAAAGGAGTGAGCAAGCGGGTGAAGAAG
GACCCTGGCGTGCCGAGCATTGCTCCCTTCAAAGAAGAGGTCCTGCGAGAGGCCGAGCAA
AGGAGGCAACAGATCGAGGAAGAAAAACAACGGAACAAAGAAGCTAAAAAAGAACAGAGA
GCCCAGAAGAGAAAACAAACTAAAGAGCCTGGAAGCAAAGAAACTGAGCCCAGTGCCAAA
AAGGCTCGGCAGGTTCAAAACTCCACCAGTCCTCCGTTGTTTTGATTTGTTGTGCTTTTA
TTGTCTCACCTTCATGTTTGTTGGGTGTGTTTCCACAGGTGGAAAGGCAGAAGAATTCAG
AAAATCAGAAAGCTGCCAACAGGAACTCCAATAAGCA

consensusID : consensus_768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence 
                              [AGCGACCAAAGTTGAAGAAGGCCAGTAAGCGGATGTGATGTTCGAAACGTTATAAGATCCAGAAAAAGGTTCGGGAACACCACAAAAAACTGAGAAAAGAGGCGAAAAAGAAAGGAGTGAGCAAGCGGGTGAAGAAGGACCCTGGCGTGCCGAGCATTGCTCCCTTCAAAGAAGAGGTCCTGCGAGAGGCCGAGCAAAGGAGGCAACAGATCGAGGAAGAAAAACAACGGAACAAAGAAGCTAAAAAAGAACAGAGAGCCCAGAAGAGAAAACAAACTAAAGAGCCTGGAAGCAAAGAAACTGAGCCCAGTGCCAAAAAGGCTCGGCAGGTGGAAAGGCAGAAGAATTCAGAAAATCAGAAAGCTGCCAACAGGAACTCCAATAAGCATCTTTGCTCTGAGTTAAACAAGGTAATCGATGCATCTGATGTGGTGATAGAA]

[+] EMBL FR0058571            [AGCGACCAAAGTTGAAGAAGGCCAGTAAGCGGATGTGATGTTCGAAACGTTATAAGATCCAGAAAAAGGTTCGGGAACACCACAAAAAACTGAGAAAAGAGGCGAAAAAGAAAGGAGTGAGCAAGCGGGTGAAGAAGGACCCTGGCGTGCCGAGCATTGCTCCCTTCAAAGAAGAGGTCCTGCGAGAGGCCGAGCAAAGGAGGCAACAGATCGAGGAAGAAAAACAACGGAACAAAGAAGCTAAAAAAGAACAGAGAGCCCAGAAGAGAAAACAAACTAAAGAGCCTGGAAGCAAAGAAACTGAGCCCAGTGCCAAAAAGGCTCGGCAGGTGGAAAGGCAGAAGAATTCAGAAAATCAGAAAGCTGCCAACAGGAACTCCAATAAGCATCTTTGCTCTGAGTTAAACAAGGTAATCGATGCATCTGATGTGGTGATAGAA]




>consensus_768#1
AGCGACCAAAGTTGAAGAAGGCCAGTAAGCGGATGTGATGTTCGAAACGTTATAAGATCC
AGAAAAAGGTTCGGGAACACCACAAAAAACTGAGAAAAGAGGCGAAAAAGAAAGGAGTGA
GCAAGCGGGTGAAGAAGGACCCTGGCGTGCCGAGCATTGCTCCCTTCAAAGAAGAGGTCC
TGCGAGAGGCCGAGCAAAGGAGGCAACAGATCGAGGAAGAAAAACAACGGAACAAAGAAG
CTAAAAAAGAACAGAGAGCCCAGAAGAGAAAACAAACTAAAGAGCCTGGAAGCAAAGAAA
CTGAGCCCAGTGCCAAAAAGGCTCGGCAGGTGGAAAGGCAGAAGAATTCAGAAAATCAGA
AAGCTGCCAACAGGAACTCCAATAAGCATCTTTGCTCTGAGTTAAACAAGGTAATCGATG
CATCTGATGTGGTGATAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_768#0      TGACAGTCGGACACACATTATTCTAAGCACATCTTCAACATGAAGCGACCAAAGTTGAAG 60
consensus_768#1      -------------------------------------------AGCGACCAAAGTTGAAG 17
                                                                *****************

consensus_768#0      AAGGCCAGTAAGCGGATGTCATGTTCGAAACGTTATAAGATCCAGAAAAAGGTTCGGGAA 120
consensus_768#1      AAGGCCAGTAAGCGGATGTGATGTTCGAAACGTTATAAGATCCAGAAAAAGGTTCGGGAA 77
                     ******************* ****************************************

consensus_768#0      CACCACAAAAAACTGAGAAAAGAGGCGAAAAAGAAAGGAGTGAGCAAGCGGGTGAAGAAG 180
consensus_768#1      CACCACAAAAAACTGAGAAAAGAGGCGAAAAAGAAAGGAGTGAGCAAGCGGGTGAAGAAG 137
                     ************************************************************

consensus_768#0      GACCCTGGCGTGCCGAGCATTGCTCCCTTCAAAGAAGAGGTCCTGCGAGAGGCCGAGCAA 240
consensus_768#1      GACCCTGGCGTGCCGAGCATTGCTCCCTTCAAAGAAGAGGTCCTGCGAGAGGCCGAGCAA 197
                     ************************************************************

consensus_768#0      AGGAGGCAACAGATCGAGGAAGAAAAACAACGGAACAAAGAAGCTAAAAAAGAACAGAGA 300
consensus_768#1      AGGAGGCAACAGATCGAGGAAGAAAAACAACGGAACAAAGAAGCTAAAAAAGAACAGAGA 257
                     ************************************************************

consensus_768#0      GCCCAGAAGAGAAAACAAACTAAAGAGCCTGGAAGCAAAGAAACTGAGCCCAGTGCCAAA 360
consensus_768#1      GCCCAGAAGAGAAAACAAACTAAAGAGCCTGGAAGCAAAGAAACTGAGCCCAGTGCCAAA 317
                     ************************************************************

consensus_768#0      AAGGCTCGGCAGGTTCAAAACTCCACCAGTCCTCCGTTGTTTTGATTTGTTGTGCTTTTA 420
consensus_768#1      AAGGCTCGGCAGGTGGAAAG--GCAGAAGAATTCAGAAAATCAGAAA-GCTGCCAACAGG 374
                     **************  ***    **  **   ** *    *  **   * **        

consensus_768#0      TTGTCTCACCTTCATGTTTGTTGGGTGTGTTTCCACAGGTGGAAAGGCAGAAGAATTCAG 480
consensus_768#1      AACTCCAATAAGCATCTTTGCTCTGAGT---TAAACAAGGTAATCGATGCATCTGATGTG 431
                        **  *    *** **** *  * **   *  *** *   *  *    *     *  *

consensus_768#0      AAAATCAGAAAGCTGCCAACAGGAACTCCAATAAGCA 517
consensus_768#1      GTGAT-AGAA--------------------------- 440
                        ** ****


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)