cluster # 847

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Takifugu rubripes
cluster # 847 cluster # 847 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_847#0 length = 402 sequences # 1

consensus_847#1 length = 313 sequences # 1

consensusID : consensus_847#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [AGTGCTTTCTGATTTTATGCTCGACCTTGATGGCGCTCAGCTTTCCACCGGTAAGAACGACCTCTGCTTTGAACTTTACATCTGCTGCTAGCTTAGAAAGGTGCAGCTCGACGCGTCCGAGCCTGGCACGAGTTGAAACCTTTAATGAACTTGTATTCACAGAGAGAGGTGACCCAATATCACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTAAGAAAACACTCTCTTCTCATGATTCTGTATCTGCGCATTTGCTTGGTTGAATTAGGCAGAAATTACACCAAAACATGCTGTTTTTGTAGTTTAGTCCTTTTTTTTTTTTTTTTACAAGGAAAAAAAACAGCTTTGCAGACTGAGCGTAGCATAACCACATCCTTCATTAAGATGCAGAG]

[+] EMBL CA590118             [AGTGCTTTCTGATTTTATGCTCGACCTTGATGGCGCTCAGCTTTCCACCGGTAAGAACGACCTCTGCTTTGAACTTTACATCTGCTGCTAGCTTAGAAAGGTGCAGCTCGACGCGTCCGAGCCTGGCACGAGTTGAAACCTTTAATGAACTTGTATTCACAGAGAGAGGTGACCCAATATCACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTAAGAAAACACTCTCTTCTCATGATTCTGTATCTGCGCATTTGCTTGGTTGAATTAGGCAGAAATTACACCAAAACATGCTGTTTTTGTAGTTTAGTCCTTTTTTTTTTTTTTTTACAAGGAAAAAAAACAGCTTTGCAGACTGAGCGTAGCATAACCACATCCTTCATTAAGATGCAGAG]




>consensus_847#0
AGTGCTTTCTGATTTTATGCTCGACCTTGATGGCGCTCAGCTTTCCACCGGTAAGAACGA
CCTCTGCTTTGAACTTTACATCTGCTGCTAGCTTAGAAAGGTGCAGCTCGACGCGTCCGA
GCCTGGCACGAGTTGAAACCTTTAATGAACTTGTATTCACAGAGAGAGGTGACCCAATAT
CACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTAAGAAAACACTCTCTTCT
CATGATTCTGTATCTGCGCATTTGCTTGGTTGAATTAGGCAGAAATTACACCAAAACATG
CTGTTTTTGTAGTTTAGTCCTTTTTTTTTTTTTTTTACAAGGAAAAAAAACAGCTTTGCA
GACTGAGCGTAGCATAACCACATCCTTCATTAAGATGCAGAG

consensusID : consensus_847#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [TCAGCTTTCCACCGAGAGAGGTGAGGCAATATCACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTGAGTATCAGAAGACGTGCACAGAGTGCGCGCCCTGTCCCGCAGGAAGTTACACCACGCGCCAGAACCGGGAAGACAGATGCAGCAGCTGCTCTAGAGACTGCAGACCAAATTTTCACCTGAAGGTGATTCAGAATTGCACGGACAAGTCAGATGTAAAGTGCGTGTGCGAGGAGGGTTACATGTGCACGCAGGAGGTGCCTTTCTCGGCTAACTGTCGATACTGCGAAAGGATCCCGGA]

[+] EMBL FR0062983            [TCAGCTTTCCACCGAGAGAGGTGAGGCAATATCACATTATAAACCGAAGGAGTTGTAAAATGTGTCCTGCAGGTGAGTATCAGAAGACGTGCACAGAGTGCGCGCCCTGTCCCGCAGGAAGTTACACCACGCGCCAGAACCGGGAAGACAGATGCAGCAGCTGCTCTAGAGACTGCAGACCAAATTTTCACCTGAAGGTGATTCAGAATTGCACGGACAAGTCAGATGTAAAGTGCGTGTGCGAGGAGGGTTACATGTGCACGCAGGAGGTGCCTTTCTCGGCTAACTGTCGATACTGCGAAAGGATCCCGGA]




>consensus_847#1
TCAGCTTTCCACCGAGAGAGGTGAGGCAATATCACATTATAAACCGAAGGAGTTGTAAAA
TGTGTCCTGCAGGTGAGTATCAGAAGACGTGCACAGAGTGCGCGCCCTGTCCCGCAGGAA
GTTACACCACGCGCCAGAACCGGGAAGACAGATGCAGCAGCTGCTCTAGAGACTGCAGAC
CAAATTTTCACCTGAAGGTGATTCAGAATTGCACGGACAAGTCAGATGTAAAGTGCGTGT
GCGAGGAGGGTTACATGTGCACGCAGGAGGTGCCTTTCTCGGCTAACTGTCGATACTGCG
AAAGGATCCCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_847#0      AGTGCTTTCTGATTTTATGCTCGACCTTGATGGCGCTCAGCTTTCCACCGGTAAGAACGA 60
consensus_847#1      ------------------------------------TCAGCTTTCCACCGAGAGAGGTGA 24
                                                         **************  *     **

consensus_847#0      CCTCTGCTTTGAACTTTACATCTGCTGCTAGCTTAGAAAGGTGCAGCTCGACGCGTCCGA 120
consensus_847#1      GG-CAATATCACATTATAAACCGAAGG--AGTTGTAAAATGTG---TCCTGCAGGT--GA 76
                        *    *   * * ** * *    *  ** *   *** ***     *  *  **  **

consensus_847#0      GCCTGGCACGAGTTGAAACCTTTAATGAACTTGTATTCACAGAGAGAGGTGACCCAATAT 180
consensus_847#1      GTATCAGAAGACGTGCA---CAGAGTGCGCGCCCTGTCCCGCAGGAAGTTACACCA---- 129
                     *  *   * **  ** *      * **  *      ** *  **  ** *   ***    

consensus_847#0      CACATTATAAACCGAAGGA--GTTGTAAAATGTGTCCTGCAGGTAAGAAAACACTCTCTT 238
consensus_847#1      CGCGCCAGAACCGGGAAGACAGATGCAGCAGCTGCTCTAGAGACTGCAGACCAAATT-TT 188
                     * *   * ** * * * **  * ** *  *  **  **  **     * * **   * **

consensus_847#0      CTCATGATTCTGTATCTGCGCATTTGCTTGGTTGAATTAGGCAGAAATTACAC---CAAA 295
consensus_847#1      CACCTGAAGGTGATTCAG---AATTGCACGGACAAGTCAGATGTAAAGTGCGTGTGCGAG 245
                     * * ***   **  ** *   * ****  **   * * **    *** * *     * * 

consensus_847#0      ACATGCTGTTTTTGTAGTTTAG---TCCTTTTTTTTTTTTTTTTACAAGGAAAAAAAACA 352
consensus_847#1      GAGGGTTACATGTGCACGCAGGAGGTGCCTTTCTCGGCTAACTGTCGATACTGCGAAAGG 305
                         * *   * ** *     *   * * *** *    *   *  * *       ***  

consensus_847#0      GCTTTGCAGACTGAGCGTAGCATAACCACATCCTTCATTAAGATGCAGAG 402
consensus_847#1      ATCCCGGA------------------------------------------ 313
                          * *

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)