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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[GGCATGGCGTCCTTCAAGTAGAGACAGAACGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTTAAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTGGGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTGGAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGACTCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATCCTGAAAGACCTGGCCTGGGAG]
[+] EMBL CA590236 [GGCATGGCGTCCTTCAAGTAGAGACAGAACGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTTAAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTGGGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTGGAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGACTCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATCCTGAAAGACCTGGCCTGGGAG]
consensusID : consensus_861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCCTTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTTANNGACAATGACCC]
[+] EMBL FR0057492 [ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCCTTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTTANNGACAATGACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_861#0 ------------------------------------------------------------
consensus_861#1 ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCC 60
consensus_861#0 ---GGCATGGCGTCCTTCAAGTAGAGACAG-------AACGCCGCTGTGCCTCAGCTGCT 50
consensus_861#1 TTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCT 120
* **** ** *** * * ** * *********************
consensus_861#0 GCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGG 110
consensus_861#1 GCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGG 180
************************************************************
consensus_861#0 GAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCAT 170
consensus_861#1 GAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCAT 240
************************************************************
consensus_861#0 GGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGT 230
consensus_861#1 GGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGT 300
************************************************************
consensus_861#0 TGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGG 290
consensus_861#1 TGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGG 360
************************************************************
consensus_861#0 GAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTT 350
consensus_861#1 GAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTT 420
******************* * ********************** ***************
consensus_861#0 AAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTG 410
consensus_861#1 ANNGACAATGACCC---------------------------------------------- 434
* ***********
consensus_861#0 GGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTG 470
consensus_861#1 ------------------------------------------------------------
consensus_861#0 GAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGAC 530
consensus_861#1 ------------------------------------------------------------
consensus_861#0 TCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATC 590
consensus_861#1 ------------------------------------------------------------
consensus_861#0 CTGAAAGACCTGGCCTGGGAG 611
consensus_861#1 ---------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |