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Takifugu rubripes
cluster # 941 cluster # 941       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_941#0 length = 617 sequences # 1  
 consensus_941#1 length = 189 sequences # 1  
consensusID : consensus_941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence 
                              [TGCCGGTGATTCCCTACCAGAAGCTGACAGACCTGTACTACCTGAGCAGAGGGGGCTTCGGCACCGTGTTTAAGGCACAGCACTCCGACTGGAGGACCACCGTGGCCATCAAGTGTCTGAAACTCGACAGCCCCGTCGGAGAAAGAGAGAGGAACTGTCTGCTGAAGGAGGCAGAGGTGCTCCACAAAGCCAGATTCAACCACATCATCCAGATCTTGGGCATCTGCAACGAACCCGAGTTCTTCTGCATAGTCACAGAATACATGAGCAATGGCTCCCTCGACCTGCTGCTCCACCAGAAAGACGTCTACCCGAGTCTCGGCTGGCCTTTGCGACTCAGGATTCTGTATGAGATTTCCCTGGGGGTTAATTTTCTCCACAACATGAACCCGCCCCTCCTCCATCATGATCTGAAGACGCAGAACATTCTCTTGGATGGGGAATTTCATGTAAAGATCGCAGATTTCGGCCTCTCGAAGTGGCGGCAGCTGTCTGTCAGTAAGGGCTCGGGCTCCAAGCCCACAGAAATGGGGGGAACTGTCATCTACATGCCCCCGGAGAGATACGACGCCTCCAAGAACCATCGGGCAGACGTGAAACACGACATGTACAGCTTT]

[+] EMBL CA591359             [TGCCGGTGATTCCCTACCAGAAGCTGACAGACCTGTACTACCTGAGCAGAGGGGGCTTCGGCACCGTGTTTAAGGCACAGCACTCCGACTGGAGGACCACCGTGGCCATCAAGTGTCTGAAACTCGACAGCCCCGTCGGAGAAAGAGAGAGGAACTGTCTGCTGAAGGAGGCAGAGGTGCTCCACAAAGCCAGATTCAACCACATCATCCAGATCTTGGGCATCTGCAACGAACCCGAGTTCTTCTGCATAGTCACAGAATACATGAGCAATGGCTCCCTCGACCTGCTGCTCCACCAGAAAGACGTCTACCCGAGTCTCGGCTGGCCTTTGCGACTCAGGATTCTGTATGAGATTTCCCTGGGGGTTAATTTTCTCCACAACATGAACCCGCCCCTCCTCCATCATGATCTGAAGACGCAGAACATTCTCTTGGATGGGGAATTTCATGTAAAGATCGCAGATTTCGGCCTCTCGAAGTGGCGGCAGCTGTCTGTCAGTAAGGGCTCGGGCTCCAAGCCCACAGAAATGGGGGGAACTGTCATCTACATGCCCCCGGAGAGATACGACGCCTCCAAGAACCATCGGGCAGACGTGAAACACGACATGTACAGCTTT]




>consensus_941#0
TGCCGGTGATTCCCTACCAGAAGCTGACAGACCTGTACTACCTGAGCAGAGGGGGCTTCG
GCACCGTGTTTAAGGCACAGCACTCCGACTGGAGGACCACCGTGGCCATCAAGTGTCTGA
AACTCGACAGCCCCGTCGGAGAAAGAGAGAGGAACTGTCTGCTGAAGGAGGCAGAGGTGC
TCCACAAAGCCAGATTCAACCACATCATCCAGATCTTGGGCATCTGCAACGAACCCGAGT
TCTTCTGCATAGTCACAGAATACATGAGCAATGGCTCCCTCGACCTGCTGCTCCACCAGA
AAGACGTCTACCCGAGTCTCGGCTGGCCTTTGCGACTCAGGATTCTGTATGAGATTTCCC
TGGGGGTTAATTTTCTCCACAACATGAACCCGCCCCTCCTCCATCATGATCTGAAGACGC
AGAACATTCTCTTGGATGGGGAATTTCATGTAAAGATCGCAGATTTCGGCCTCTCGAAGT
GGCGGCAGCTGTCTGTCAGTAAGGGCTCGGGCTCCAAGCCCACAGAAATGGGGGGAACTG
TCATCTACATGCCCCCGGAGAGATACGACGCCTCCAAGAACCATCGGGCAGACGTGAAAC
ACGACATGTACAGCTTT

consensusID : consensus_941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence 
                              [TGCCGGGGATTCCCTACCAGAAGGTGACAGACCTGTACTACCTGAGCAGACTGGGCTTCGGCACCGTGTTTAAGGCACAGCACTCCGACTGGCGGACCACCGTGGCCATCAAGAGTCTGAAACTCGACAGCCCCCGCCGGAGAAAGGTAATTGGCGGCGACACCACAGGAGGACCTACTCCCCCTTTGA]

[+] EMBL FR0058881            [TGCCGGGGATTCCCTACCAGAAGGTGACAGACCTGTACTACCTGAGCAGACTGGGCTTCGGCACCGTGTTTAAGGCACAGCACTCCGACTGGCGGACCACCGTGGCCATCAAGAGTCTGAAACTCGACAGCCCCCGCCGGAGAAAGGTAATTGGCGGCGACACCACAGGAGGACCTACTCCCCCTTTGA]




>consensus_941#1
TGCCGGGGATTCCCTACCAGAAGGTGACAGACCTGTACTACCTGAGCAGACTGGGCTTCG
GCACCGTGTTTAAGGCACAGCACTCCGACTGGCGGACCACCGTGGCCATCAAGAGTCTGA
AACTCGACAGCCCCCGCCGGAGAAAGGTAATTGGCGGCGACACCACAGGAGGACCTACTC
CCCCTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_941#0      TGCCGGTGATTCCCTACCAGAAGCTGACAGACCTGTACTACCTGAGCAGAGGGGGCTTCG 60
consensus_941#1      TGCCGGGGATTCCCTACCAGAAGGTGACAGACCTGTACTACCTGAGCAGACTGGGCTTCG 60
                     ****** **************** **************************  ********

consensus_941#0      GCACCGTGTTTAAGGCACAGCACTCCGACTGGAGGACCACCGTGGCCATCAAGTGTCTGA 120
consensus_941#1      GCACCGTGTTTAAGGCACAGCACTCCGACTGGCGGACCACCGTGGCCATCAAGAGTCTGA 120
                     ******************************** ******************** ******

consensus_941#0      AACTCGACAGCCCC-GTCGGAGAAAGAGAGAGGAACTGTCTGCTGAAGGAGGCAGAGGTG 179
consensus_941#1      AACTCGACAGCCCCCGCCGGAGAAAGGTAATTGGCGGCGACACCACAGGAGGACCTACTC 180
                     ************** * *********  *   *         *   ******      * 

consensus_941#0      CTCCACAAAGCCAGATTCAACCACATCATCCAGATCTTGGGCATCTGCAACGAACCCGAG 239
consensus_941#1      CCCCTTTGA--------------------------------------------------- 189
                     * **    *                                                   

consensus_941#0      TTCTTCTGCATAGTCACAGAATACATGAGCAATGGCTCCCTCGACCTGCTGCTCCACCAG 299
consensus_941#1      ------------------------------------------------------------
                                                                                 

consensus_941#0      AAAGACGTCTACCCGAGTCTCGGCTGGCCTTTGCGACTCAGGATTCTGTATGAGATTTCC 359
consensus_941#1      ------------------------------------------------------------
                                                                                 

consensus_941#0      CTGGGGGTTAATTTTCTCCACAACATGAACCCGCCCCTCCTCCATCATGATCTGAAGACG 419
consensus_941#1      ------------------------------------------------------------
                                                                                 

consensus_941#0      CAGAACATTCTCTTGGATGGGGAATTTCATGTAAAGATCGCAGATTTCGGCCTCTCGAAG 479
consensus_941#1      ------------------------------------------------------------
                                                                                 

consensus_941#0      TGGCGGCAGCTGTCTGTCAGTAAGGGCTCGGGCTCCAAGCCCACAGAAATGGGGGGAACT 539
consensus_941#1      ------------------------------------------------------------
                                                                                 

consensus_941#0      GTCATCTACATGCCCCCGGAGAGATACGACGCCTCCAAGAACCATCGGGCAGACGTGAAA 599
consensus_941#1      ------------------------------------------------------------
                                                                                 

consensus_941#0      CACGACATGTACAGCTTT 617
consensus_941#1      ------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)