These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence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consensusID : consensus_1009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [TTTTTTTCATTTCATTTCCTTTCTTTCTTTTCTTCTTTATTTCATATTATTACAAACTCTTCATTATCTAATCTTTCTCATCCTATTCCTTTTTTTCACCCTATTCAACCTACTTTCCATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTTAACTTCTTTGTACATTGTGCATCACTTTTA] [+] EMBL CNS08MB5 [TTTTTTTCATTTCATTTCCTTTCTTTCTTTTCTTCTTTATTTCATATTATTACAAACTCTTCATTATCTAATCTTTCTCATCCTATTCCTTTTTTTCACCCTATTCAACCTACTTTCCATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTTAACTTCTTTGTACATTGTGCATCACTTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1009#0 TTTTCTTTCTTTTCAA---CTTTCTTATATTTCTCTTTTCTCAAACACTACAACAA---- 53 consensus_1009#1 -TTTTTTTCATTTCATTTCCTTTCTTTCTTTTCTTCTTTATTTCATATTATTACAAACTC 59 *** **** ***** ******* ***** *** * * * ** **** consensus_1009#0 --CATAACCTTATTCTTTCTCTTCCTATTCCTTTTTTTCACCCTACTCAACCTACTTTCC 111 consensus_1009#1 TTCATTATCTAAT-CTTTCTCATCCTATTCCTTTTTTTCACCCTATTCAACCTACTTTCC 118 *** * ** ** ******* *********************** ************** consensus_1009#0 ATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTAACTTCTTTTACATTTCATCTCT 171 consensus_1009#1 ATCTTCTACTTTTTCATCCTTTCACTATATCTACTTTTAACTTCTTTGTACATTGTGCAT 178 ************************************* * * *** * * * * consensus_1009#0 ATACTTCTTATTTCTTATTCCTTACACTATCTTTTTTTATACTTCTTTTTCCTTTTCTAA 231 consensus_1009#1 -CACTTTTA--------------------------------------------------- 186 **** * consensus_1009#0 CATCAAACCCCAAATTTTTTCCATCTTTCTTATCTTTTCATCCTTTAATATTCCTTTTAA 291 consensus_1009#1 ------------------------------------------------------------ consensus_1009#0 TTTTATTACCAAATACTTCTTCCAATCAATAAACCAAATCTATATTTTTACCATTTCTAC 351 consensus_1009#1 ------------------------------------------------------------ consensus_1009#0 CTTTTCCATCTTCATCTCTTTTCTTTTTTTCTTTTCTT 389 consensus_1009#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||