These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [ATCCGCAGCATCCGCAGCGGACAAGTAGCATTGCGCTTTCAATGCACATCGGCCTGCCAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAACAGTGATCTGTTTCTACAGGGTACCGGAACAATCCGGAGCACAGAGAGGCATATCGGTGTTTTTTTTTTTTTGTTTTGCGTTGGCTTCGCCGGTGTTTGTGTGTGT] [+] EMBL AGA285300 [ATCCGCAGCATCCGCAGCGGACAAGTAGCATTGCGCTTTCAATGCACATCGGCCTGCCAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAACAGTGATCTGTTTCTACAGGGTACCGGAACAATCCGGAGCACAGAGAGGCATATCGGTGTTTTTTTTTTTTTGTTTTGCGTTGGCTTCGCCGGTGTTTGTGTGTGT] consensusID : consensus_1019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [CGGCAGTGTGCGTGCGTGTTCACCAGGCGAGACGCGGACCTCATTCACACGCTCTGTCTAGCGCAAGAAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAA] [+] EMBL AGA282746 [CGGCAGTGTGCGTGCGTGTTCACCAGGCGAGACGCGGACCTCATTCACACGCTCTGTCTAGCGCAAGAAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAAAAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGAAGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTTACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGCAGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATTTGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1019#0 -----ATCCGCA-GCATCCGCAGCGGACAAGTAGCATTGCGCTTTCAATGCACATCGGCC 54 consensus_1019#1 CGGCAGTGTGCGTGCGTGTTCACCAGGCGAGACGCGGACCTCATTCA-CACGCTCTGTCT 59 * ** ** * ** * * * ** ** * * **** * * * * consensus_1019#0 TGCC-----AGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAA 109 consensus_1019#1 AGCGCAAGAAGTGTTTTTTGGGAGCTGAAAAAGTGAACAAGACAAATTTCCTTCACCGAA 119 ** *************************************************** consensus_1019#0 AAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGA 169 consensus_1019#1 AAACAGAACGAAAAGTGATTGTAAGTGTGTGTGTGTGTGATTCCAGAAGAGTTAAACAGA 179 ************************************************************ consensus_1019#0 AGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTT 229 consensus_1019#1 AGGAAAGAAGAATTACGCCCTTCCCTGTGGCGACGGTGCCACACTGTCAGGTTTAGTGTT 239 ************************************************************ consensus_1019#0 ACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGC 289 consensus_1019#1 ACACGCGCGCGTGTGTGTGTTCGTGCCTGTGTGGTTGATGCACAATATCAAGGCACTTGC 299 ************************************************************ consensus_1019#0 AGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATT 349 consensus_1019#1 AGAGGAATTACAAAAAAATATTAAAAGATCGTGCGTTTGTGTGTGATAAGCAGTGAAATT 359 ************************************************************ consensus_1019#0 TGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAACAGTGATCTGTTTCTACA 409 consensus_1019#1 TGTGTGAAAATTTCATCACTTCATCAGCAGCAGCACCGAAAA------------------ 401 ****************************************** consensus_1019#0 GGGTACCGGAACAATCCGGAGCACAGAGAGGCATATCGGTGTTTTTTTTTTTTTGTTTTG 469 consensus_1019#1 ------------------------------------------------------------ consensus_1019#0 CGTTGGCTTCGCCGGTGTTTGTGTGTGT 497 consensus_1019#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||