These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [GGCAAGAATCGGCACGTGGCTTGAAATGCACTGCACCCTGCAGATCACCGACATTGATCCAGCCGTTGCGGCGTTCCACTTGTTGATCCGTCAGCCCGTCGGTGCGCAGAATCTTTGACTTGAGCCAGGACAGGTAGTAGACGCGGACACGGTTCTTCTTGCCCGAGATGGTCACCAGTATGTTCTGGCCTTCGAGCACCTCCATCTGCTGGAACCGCCGACGGGATATCAGCTGGTACACCTTGCCCTGGCCGGAGCGATCGAGCAACATCAGCCCGTTCTCCGTGCCGATCAGCAAATTGACACCCCACAGGGCCGCGCACAGTATCTCGGAGTTGAAACGCTTCTTGTACTTCCGTATTTCGGGCGTATCACTCGTTGCATCGTGCGACGTCGGCGTCACGTTCACGTTCACGTGACTCTCGCGCCGTGATGCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGGAAGCTGCGCTGCGTTCTCTTCGCTGGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAACGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCCTACTATTCGTCGANGCCGAGCGATGCTTTCTG] [+] EMBL BX468415 [GGCAAGAATCGGCACGTGGCTTGAAATGCACTGCACCCTGCAGATCACCGACATTGATCCAGCCGTTGCGGCGTTCCACTTGTTGATCCGTCAGCCCGTCGGTGCGCAGAATCTTTGACTTGAGCCAGGACAGGTAGTAGACGCGGACACGGTTCTTCTTGCCCGAGATGGTCACCAGTATGTTCTGGCCTTCGAGCACCTCCATCTGCTGGAACCGCCGACGGGATATCAGCTGGTACACCTTGCCCTGGCCGGAGCGATCGAGCAACATCAGCCCGTTCTCCGTGCCGATCAGCAAATTGACACCCCACAGGGCCGCGCACAGTATCTCGGAGTTGAAACGCTTCTTGTACTTCCGTATTTCGGGCGTATCACTCGTTGCATCGTGCGACGTCGGCGTCACGTTCACGTTCACGTGACTCTCGCGCCGTGATGCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGGAAGCTGCGCTGCGTTCTCTTCGCTGGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAACGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCCTACTATTCGTCGANGCCGAGCGATGCTTTCTG] consensusID : consensus_1053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [GCACAGTATCCTNCGGACTTGAAACGCTTTCTTTGNTACCTTCCCGTATTTTCCGGGGCGTATCACCTCGCTTGCATCGTGCGACGTCCGGCCGTCACGTTCACGTTCACGTGACTCTCGCGCCGTGATCCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGAAGCTGCCGCTGCCTTCTCTTCGCTGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAAGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCTACTATTCTCACCCGAGCGATTCTTCTGTTGACCATCAAACAGCAGCGATTGCTGCGGCCGGTTGGGCGAGTTACGTACGAAGATGACGGATTCAGTTTTTTCGCGCCGCGGACGCAAGAAGTCCATGTTGCGCGGTGTCACCTGCGCGCTTGCCAGTGGACTCGGCTGTCGCCCTCCGTTCCCACCTTCCTTTGGTGTGCCAGCACCTCCTCCTCCTGCTCCTCCTCCTACACCTGTTCCTCTTGCACCCCCACCGCCGTCCTGCTGACCGTGGCGTGGTGGAGTCTGTCGTCCACGTGCCGAATTCTTGGCC] [-] EMBL BX468933 [GCACAGTATCCTNCGGACTTGAAACGCTTTCTTTGNTACCTTCCCGTATTTTCCGGGGCGTATCACCTCGCTTGCATCGTGCGACGTCCGGCCGTCACGTTCACGTTCACGTGACTCTCGCGCCGTGATCCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAGGAAGCTGCCGCTGCCTTCTCTTCGCTGGCGGACTTGTCATGTCTGGGAGGCGTCGCCGGTGAAGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCGAGGCTACTATTCTCACCCGAGCGATTCTTCTGTTGACCATCAAACAGCAGCGATTGCTGCGGCCGGTTGGGCGAGTTACGTACGAAGATGACGGATTCAGTTTTTTCGCGCCGCGGACGCAAGAAGTCCATGTTGCGCGGTGTCACCTGCGCGCTTGCCAGTGGACTCGGCTGTCGCCCTCCGTTCCCACCTTCCTTTGGTGTGCCAGCACCTCCTCCTCCTGCTCCTCCTCCTACACCTGTTCCTCTTGCACCCCCACCGCCGTCCTGCTGACCGTGGCGTGGTGGAGTCTGTCGTCCACGTGCCGAATTCTTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1053#0 GGCAAGAATCGGCACGTGGCTTGAAATGCACTGCACCCTGCAGATCACCGACATTGATCC 60 consensus_1053#1 -GCACAGTATCCTNCG-GACTTGAAACGCTTT---CTTTGNTACCTTCCCGTATTTTCCG 55 *** ** * ******* ** * * ** ** *** * consensus_1053#0 AGCCGTTGCGGCGTTCCACTTGT-TGATCCGTCAGCCCGTCGGTGCGCAGAATCTTTGAC 119 consensus_1053#1 GGGCGT---ATCACCTCGCTTGCATCGTGCGACGTCCGGCCGTCACGTTCA--CGTTCAC 110 * *** * * **** * * ** * ** * ** ** * * ** ** consensus_1053#0 TTGAGCCAGGACAGGTAGTAGACGCGGAC-ACGGTTCTTCTTGCCCGAGATGGTCACCAG 178 consensus_1053#1 GTGACTCTCGCGCCGTGATCCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGTGAG 170 *** * * ** * ** * ** * ** *** ** * * ** consensus_1053#0 TATGTTCTGGCCTTCGAGCACCTCCATCTGCTGGAACCGCC--GACGGGATATCA--GCT 234 consensus_1053#1 GAAGCT---GCCGCTGCCTTCTCTTCGCTGGCGGACTTGTCATGTCTGGGAGGCGTCGCC 227 * * * *** * * *** *** * * * * ** * ** consensus_1053#0 GGTACACCTTGCCCTGGCCGGAGCGATCGAGCAACATCAGCCCGTTCTCCGTGCCGATCA 294 consensus_1053#1 GGTGAAGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCGGGCGTACCG 287 *** * **** * * * ** * * * ** * *** ** * * consensus_1053#0 GCAAATTGACACCCCACAGGGCCGCGCACAGTATCTCGGAGTTGAAAC-GCTTCTTGTAC 353 consensus_1053#1 AGGCTACTATTCTCACCCGAGCGATTC---TTCTGTTGACCATCAAACAGCAGCGATTGC 344 * * * * * ** * * * * * * **** ** * * * consensus_1053#0 TTCCGTATTTCGGGCGTATCACTCGTTGCATCGTGCGACGTCGGCGTCACGT-TCACGTT 412 consensus_1053#1 TGCGGCCGGTTGGGCGAGTTACGTACGAAGATGACGGATTCAGTTTTTTCGCGCCGCGGA 404 * * * * ***** * ** * ** * * ** * ** consensus_1053#0 CACGTGACTCTCGCGCCGTGATGCGGCCGATCCACCGGACTGTGCGCCAAAGCCGAACGT 472 consensus_1053#1 CGCAAGAAGTCCATGTTGCGCGGTGTC--ACCTGCGCGCTTGC-CAGTGGACTCGGCTGT 461 * * ** * * * * * * * * * * * ** * * ** ** consensus_1053#0 GAGGGAAGCTGCGCTGCGTTCTCTTCGCTGGGCGGACTTGTCATGTCTGGGAGGCGTCGC 532 consensus_1053#1 C--GCCCTCCGTTCCCACCTTCCTTTGGTGTGCCAGCACCTCCTCCTCCTGCTCCTCCTC 519 * * * * * *** * ** ** * ** * * * * * consensus_1053#0 CGGTGAACGCTTGACTAAGTAGATCCGGCAGGACGCTGCTCGTTCGCTGGCCG-GGCGTA 591 consensus_1053#1 CTACACCTGTTCCTCT---TGCACCCC------CACCGCCGTCCTGCTGACCGTGGCGTG 570 * * * ** * * ** * * ** **** *** ***** consensus_1053#0 CCGAGGCCTACTATTCGTCGANGCCGAGCGATGCTTTCTG 631 consensus_1053#1 GTGGAGTCTGTCGTCCAC--GTGCCGAATTCTTGGCC--- 605 * * ** * * ***** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||