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Anopheles gambiae
cluster # 117 cluster # 117       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_117#0 length = 537 sequences # 1  
consensus_117#1 length = 506 sequences # 1  

consensusID : consensus_117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence
                              [CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGGTTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGTAACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTGCGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGCATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGGTTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGCCTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG]

[+] EMBL BX466833             [CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGGTTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGTAACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTGCGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGCATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGGTTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGCCTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG]


>consensus_117#0 CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGG TTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGT AACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTG CGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGC ATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTT ACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGG TTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGC CTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCG GATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG



consensusID : consensus_117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence
                              [TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGGTTGTACAGGCGTGTCGCTATAACGTCCGGCGGTGTCATCGTGATGGCCATTACCGTGCCTCCGACCGCGCCGGCGACAGTCGACACAAACGTATCGCTTTGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAATGCGGCCAGCTGACCACCGCTGCCGAGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTCCTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCTATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAAGCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG]

[-] EMBL BX624341             [TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGGTTGTACAGGCGTGTCGCTATAACGTCCGGCGGTGTCATCGTGATGGCCATTACCGTGCCTCCGACCGCGCCGGCGACAGTCGACACAAACGTATCGCTTTGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAATGCGGCCAGCTGACCACCGCTGCCGAGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTCCTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCTATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAAGCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG]


>consensus_117#1 TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTTACGAAACAA TCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGGTTGTACAGG CGTGTCGCTATAACGTCCGGCGGTGTCATCGTGATGGCCATTACCGTGCCTCCGACCGCG CCGGCGACAGTCGACACAAACGTATCGCTTTGCTGTGCACTAACCGGATGTCGAACGAGG AAATCTTTCGTGTAACCGAATGCGGCCAGCTGACCACCGCTGCCGAGCAAGGCGCGTGGC ATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTCCTGAAAATGTCTTTC ATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCTATTTCTGCCTTGGCC TGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAAGCCGACCCGACGAAT CCTTCCTGGTCAGTNGCCCCAGAANG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_117#0      CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGG 60
consensus_117#1      ------------------------------------------------------------
                                                                                 

consensus_117#0      TTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGT 120
consensus_117#1      ------------------------------------------------------------
                                                                                 

consensus_117#0      AACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTG 180
consensus_117#1      ------------------------------------------------------------
                                                                                 

consensus_117#0      CGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGC 240
consensus_117#1      ------------------------------------------------------------
                                                                                 

consensus_117#0      ATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTT 300
consensus_117#1      ---------TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTT 51
                               *** ***************************  **** ************

consensus_117#0      ACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGG 360
consensus_117#1      ACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGG 111
                     ****************************************** **********  *****

consensus_117#0      TTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGC 420
consensus_117#1      TTGTACAGGCGTGTCGCTATAA-CGTCCGGCGGTGTCA-TCGTGATGGCCATTACCGTGC 169
                     *********************  ************* * *********************

consensus_117#0      CTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCG 480
consensus_117#1      CTCCGACCGCGCCGGCGACAGTCGACACA--AACGTATCGCTT-TGCTGTGCACTAACCG 226
                     ********* ******    ******       ********** ****************

consensus_117#0      GATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG--- 537
consensus_117#1      GATGTCGAACGAGGAAATCTTTCGTGTAACCGAA-TGCGGCCAGCTGACCACCGCTGCCG 285
                     ********************************** ************ ****   **   

consensus_117#0      ------------------------------------------------------------
consensus_117#1      AGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTC 345
                                                                                 

consensus_117#0      ------------------------------------------------------------
consensus_117#1      CTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCT 405
                                                                                 

consensus_117#0      ------------------------------------------------------------
consensus_117#1      ATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAA 465
                                                                                 

consensus_117#0      -----------------------------------------
consensus_117#1      GCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG 506
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)