These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGGTTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGTAACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTGCGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGCATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGGTTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGCCTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG] [+] EMBL BX466833 [CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGGTTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGTAACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTGCGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGCATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGGTTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGCCTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG] consensusID : consensus_117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGGTTGTACAGGCGTGTCGCTATAACGTCCGGCGGTGTCATCGTGATGGCCATTACCGTGCCTCCGACCGCGCCGGCGACAGTCGACACAAACGTATCGCTTTGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAATGCGGCCAGCTGACCACCGCTGCCGAGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTCCTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCTATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAAGCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG] [-] EMBL BX624341 [TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTTACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGGTTGTACAGGCGTGTCGCTATAACGTCCGGCGGTGTCATCGTGATGGCCATTACCGTGCCTCCGACCGCGCCGGCGACAGTCGACACAAACGTATCGCTTTGCTGTGCACTAACCGGATGTCGAACGAGGAAATCTTTCGTGTAACCGAATGCGGCCAGCTGACCACCGCTGCCGAGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTCCTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCTATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAAGCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_117#0 CACATGCTGCCTTTGTGAATTTTTTNAAATGGTTCAGAAAACATGATTATTTTTGTTTGG 60 consensus_117#1 ------------------------------------------------------------ consensus_117#0 TTTAACATTTTCAACACTGTTAGCTACCGACTATTTGCTAGACGCTAAAATACAGAAAGT 120 consensus_117#1 ------------------------------------------------------------ consensus_117#0 AACAAAGTCTTTTCGTGGCCGTCCGACCGGGCAAACTATTTTGCCTCGTAGTATTTCCTG 180 consensus_117#1 ------------------------------------------------------------ consensus_117#0 CGCATCGTTTTCAGTTCATCGAAGAATAGCAACACCAGCGTTGCGTGCGGCCCAATTCGC 240 consensus_117#1 ------------------------------------------------------------ consensus_117#0 ATGTAGTGTGGCCAAAAGCCTTTGTACAGCCCGGCCACACCCTCCGCCTTGAGTATTTTT 300 consensus_117#1 ---------TGCCCAAAGCCTTTGTACAGCCCGGCCACACCNNCCGCTTTGAGTATTTTT 51 *** *************************** **** ************ consensus_117#0 ACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCTTGGCATCCACTCCTTGG 360 consensus_117#1 ACGAAACAATCCACCACCCCGTTGTAGTAAATCCCCCTACCCCTGGCATCCACNNCTTGG 111 ****************************************** ********** ***** consensus_117#0 TTGTACAGGCGTGTCGCTATANACGTCCGGCGGTGTAACTCGTGATGGCCATTACCGTGC 420 consensus_117#1 TTGTACAGGCGTGTCGCTATAA-CGTCCGGCGGTGTCA-TCGTGATGGCCATTACCGTGC 169 ********************* ************* * ********************* consensus_117#0 CTCCGACCGGGCCGGCACAGGTCGACTTCTTGNCGTATCGCTTATGCTGTGCACTAACCG 480 consensus_117#1 CTCCGACCGCGCCGGCGACAGTCGACACA--AACGTATCGCTT-TGCTGTGCACTAACCG 226 ********* ****** ****** ********** **************** consensus_117#0 GATGTCGAACGAGGAAATCTTTCGTGTAACCGAAGTGCGGCCAGCTGGCCACGAGTG--- 537 consensus_117#1 GATGTCGAACGAGGAAATCTTTCGTGTAACCGAA-TGCGGCCAGCTGACCACCGCTGCCG 285 ********************************** ************ **** ** consensus_117#0 ------------------------------------------------------------ consensus_117#1 AGCAAGGCGCGTGGCATCGTCACTGCTACGCCACGGTACAGGCCCTGCACGCCGTGCTTC 345 consensus_117#0 ------------------------------------------------------------ consensus_117#1 CTGAAAATGTCTTTCATAGCGCTGATCATACCGCTGTGCTGGTGCTGGTAACCGACCGCT 405 consensus_117#0 ------------------------------------------------------------ consensus_117#1 ATTTCTGCCTTGGCCTGTGATTGGAGATGTGTGCGTAGCATAAAGAAGGGACTTGCCAAA 465 consensus_117#0 ----------------------------------------- consensus_117#1 GCCGACCCGACGAATCCTTCCTGGTCAGTNGCCCCAGAANG 506 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||