These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAAAATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTTAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTACCGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATCAACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAGTATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTCTTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACACATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA] [+] EMBL BX627191 [TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAAAATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTTAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTACCGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATCAACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAGTATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTCTTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACACATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA] consensusID : consensus_1179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [GCGGCAGGAAAAGAAAATAGATTTCAAACAAACAAACAAACAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTT] [+] EMBL BX616451 [GCGGCAGGAAAAGAAAATAGATTTCAAACAAACAAACAAACAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1179#0 TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAA 60 consensus_1179#1 ----------------------------GCGGCAGGAAAAGAAAATAGATTT--CAAACA 30 *** *** * * ** * consensus_1179#0 AATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCA 120 consensus_1179#1 AACAA-ACAAA---CAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCA 86 ** ** * * * ********************************************** consensus_1179#0 GCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTT 180 consensus_1179#1 GCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTT 146 ************************************************************ consensus_1179#0 ATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCAC 240 consensus_1179#1 ATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCAC 206 ************************************ *********************** consensus_1179#0 ACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTA 300 consensus_1179#1 ACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTA 266 ******************************* **************************** consensus_1179#0 TGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTT 360 consensus_1179#1 TGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTT 326 ****** **** ************************************************ consensus_1179#0 TAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTAC 420 consensus_1179#1 T----------------------------------------------------------- 327 * consensus_1179#0 CGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATC 480 consensus_1179#1 ------------------------------------------------------------ consensus_1179#0 AACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAG 540 consensus_1179#1 ------------------------------------------------------------ consensus_1179#0 TATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTC 600 consensus_1179#1 ------------------------------------------------------------ consensus_1179#0 TTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACAC 660 consensus_1179#1 ------------------------------------------------------------ consensus_1179#0 ATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA 698 consensus_1179#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||