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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[CCGCGGACGCGTGGGCGGGTAACGTTTTTTTTCTTTTCGTGAGAACAGAATCCCAGCGCGCACATGGTACTTTTGATGGTTTTTACCGTATGCAAACCGAACATACCTTTGTTGTAAGATAAAATTTTTGAAAAGGTAAGCACAGCTACTGACACAGAGCCGGTAGTGTTTGGTACTTTGTCTCTTGTTGTGAGAGTATTTATTAATGTCATTCCCAAACCTGTGTGTATTTTTCTTCTTATCGATTTTGTCCACGGTTTGTTTGTGATGTTAAGATCTGGATCAGTTATACAACAGCAACACTTCTCAGTTTCGTTTCCCCCTTTAATCCTACAAATATCGAATAACTTCTATCACCCGTCACCTTTCCACTGTTGGTTTTGTAAATTAGTTTGTATGAACATATTTAAGTTGTATTTTGTTCTAAGCACTTTGGTCTTGAATAAACATCTCGACGATTAAAGTACTGTAATCTTTGTTTTTTATCTTTGTTTTTTTACAAAAAATACACTCAGAAGTTTATACAAAACCTTGCACTTATTAAACTCGAAGCACCATTACAAATACTTCCCTCAGTAAGAGAAATAACTGCAAAACTGCTTCGTCTTTCTAGCGTTTATTTCATTCGCCGTTTTAGAACATTGCTTTACC]
[+] EMBL BM632369 [CCGCGGACGCGTGGGCGGGTAACGTTTTTTTTCTTTTCGTGAGAACAGAATCCCAGCGCGCACATGGTACTTTTGATGGTTTTTACCGTATGCAAACCGAACATACCTTTGTTGTAAGATAAAATTTTTGAAAAGGTAAGCACAGCTACTGACACAGAGCCGGTAGTGTTTGGTACTTTGTCTCTTGTTGTGAGAGTATTTATTAATGTCATTCCCAAACCTGTGTGTATTTTTCTTCTTATCGATTTTGTCCACGGTTTGTTTGTGATGTTAAGATCTGGATCAGTTATACAACAGCAACACTTCTCAGTTTCGTTTCCCCCTTTAATCCTACAAATATCGAATAACTTCTATCACCCGTCACCTTTCCACTGTTGGTTTTGTAAATTAGTTTGTATGAACATATTTAAGTTGTATTTTGTTCTAAGCACTTTGGTCTTGAATAAACATCTCGACGATTAAAGTACTGTAATCTTTGTTTTTTATCTTTGTTTTTTTACAAAAAATACACTCAGAAGTTTATACAAAACCTTGCACTTATTAAACTCGAAGCACCATTACAAATACTTCCCTCAGTAAGAGAAATAACTGCAAAACTGCTTCGTCTTTCTAGCGTTTATTTCATTCGCCGTTTTAGAACATTGCTTTACC]
consensusID : consensus_12#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[GATAACCAAAGAGTGCTCAACTCGATGTCACAGAAGGTGGAACCGCGTCGATCTTAAGGATGCTTCACAGCGCAAAAAAACGCATCGCAACACCACCCCACCAATTCCGACCACCAGTTGCGCATATGAAAGGTCAAGCTGGTACCGAGAGACCAAAAAACCCGCCCAATCCTACAATTGCCCGGTTGTTCGGGGTAACGTTTTTCTTTTCGTGAGAACAGAATCCCAGCGCGCACGGTACTTTTGATGGTTTTTACCATATGCAAACCGAAAATACCTTTGTTGTAAGATAACATTTTTGAAAAGGTAAGCACAGCTACTGACACAGAGTCGGGTGTGTTTGGTACTTTGTCTCTTGTTGTGAGAGTATTTATTAACGTCATTCCCAACCCTGTGTGTGTTTTGCTTCTCAACGATTTTGTCCACGGTTTGTTTGTGATGTTAAGATCTGGATCAGTTATACAACAGCAACACTTCTCAGTTTCGTTTCCCCCTTTAATCCTACAAATATCGAATAACTTCTATCACCCGTCACCTTTCCACTGTTGGTTTTGTAAATTAGTTTGTATGAACATGTTTAAGTTGTATTTTGTTCTAAGCGCACTTTGGTCTTGAATAAACAGCTCGA]
[+] EMBL BX626536 [GATAACCAAAGAGTGCTCAACTCGATGTCACAGAAGGTGGAACCGCGTCGATCTTAAGGATGCTTCACAGCGCAAAAAAACGCATCGCAACACCACCCCACCAATTCCGACCACCAGTTGCGCATATGAAAGGTCAAGCTGGTACCGAGAGACCAAAAAACCCGCCCAATCCTACAATTGCCCGGTTGTTCGGGGTAACGTTTTTCTTTTCGTGAGAACAGAATCCCAGCGCGCACGGTACTTTTGATGGTTTTTACCATATGCAAACCGAAAATACCTTTGTTGTAAGATAACATTTTTGAAAAGGTAAGCACAGCTACTGACACAGAGTCGGGTGTGTTTGGTACTTTGTCTCTTGTTGTGAGAGTATTTATTAACGTCATTCCCAACCCTGTGTGTGTTTTGCTTCTCAACGATTTTGTCCACGGTTTGTTTGTGATGTTAAGATCTGGATCAGTTATACAACAGCAACACTTCTCAGTTTCGTTTCCCCCTTTAATCCTACAAATATCGAATAACTTCTATCACCCGTCACCTTTCCACTGTTGGTTTTGTAAATTAGTTTGTATGAACATGTTTAAGTTGTATTTTGTTCTAAGCGCACTTTGGTCTTGAATAAACAGCTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12#0 ------------------------------------------------------------
consensus_12#1 GATAACCAAAGAGTGCTCAACTCGATGTCACAGAAGGTGGAACCGCGTCGATCTTAAGGA 60
consensus_12#0 ------------------------------------------------------------
consensus_12#1 TGCTTCACAGCGCAAAAAAACGCATCGCAACACCACCCCACCAATTCCGACCACCAGTTG 120
consensus_12#0 ---------------------------------------------------CCGCGGACG 9
consensus_12#1 CGCATATGAAAGGTCAAGCTGGTACCGAGAGACCAAAAAACCCGCCCAATCCTACAATTG 180
* * *
consensus_12#0 CGTGGGCGGGTAACGT--TTTTTTTCTTTTCGTGAGAACAGAATCCCAGCGCGCACATGG 67
consensus_12#1 CCCGGTTGTTCGGGGTAACGTTTTTCTTTTCGTGAGAACAGAATCCCAGCGCGCAC--GG 238
* ** * ** ************************************ **
consensus_12#0 TACTTTTGATGGTTTTTACCGTATGCAAACCGAACATACCTTTGTTGTAAGATAAAATTT 127
consensus_12#1 TACTTTTGATGGTTTTTACCATATGCAAACCGAAAATACCTTTGTTGTAAGATAACATTT 298
******************** ************* ******************** ****
consensus_12#0 TTGAAAAGGTAAGCACAGCTACTGACACAGAGCCGGTAGTGTTTGGTACTTTGTCTCTTG 187
consensus_12#1 TTGAAAAGGTAAGCACAGCTACTGACACAGAGTCGGGTGTGTTTGGTACTTTGTCTCTTG 358
******************************** *** **********************
consensus_12#0 TTGTGAGAGTATTTATTAATGTCATTCCCAAACCTGTGTGTATTTTTCTTCTTATCGATT 247
consensus_12#1 TTGTGAGAGTATTTATTAACGTCATTCCCAACCCTGTGTGTGTTTTGCTTCTCAACGATT 418
******************* *********** ********* **** ***** * *****
consensus_12#0 TTGTCCACGGTTTGTTTGTGATGTTAAGATCTGGATCAGTTATACAACAGCAACACTTCT 307
consensus_12#1 TTGTCCACGGTTTGTTTGTGATGTTAAGATCTGGATCAGTTATACAACAGCAACACTTCT 478
************************************************************
consensus_12#0 CAGTTTCGTTTCCCCCTTTAATCCTACAAATATCGAATAACTTCTATCACCCGTCACCTT 367
consensus_12#1 CAGTTTCGTTTCCCCCTTTAATCCTACAAATATCGAATAACTTCTATCACCCGTCACCTT 538
************************************************************
consensus_12#0 TCCACTGTTGGTTTTGTAAATTAGTTTGTATGAACATATTTAAGTTGTATTTTGTTCTAA 427
consensus_12#1 TCCACTGTTGGTTTTGTAAATTAGTTTGTATGAACATGTTTAAGTTGTATTTTGTTCTAA 598
************************************* **********************
consensus_12#0 GC--ACTTTGGTCTTGAATAAACATCTCGACGATTAAAGTACTGTAATCTTTGTTTTTTA 485
consensus_12#1 GCGCACTTTGGTCTTGAATAAACAGCTCGA------------------------------ 628
** ******************** *****
consensus_12#0 TCTTTGTTTTTTTACAAAAAATACACTCAGAAGTTTATACAAAACCTTGCACTTATTAAA 545
consensus_12#1 ------------------------------------------------------------
consensus_12#0 CTCGAAGCACCATTACAAATACTTCCCTCAGTAAGAGAAATAACTGCAAAACTGCTTCGT 605
consensus_12#1 ------------------------------------------------------------
consensus_12#0 CTTTCTAGCGTTTATTTCATTCGCCGTTTTAGAACATTGCTTTACC 651
consensus_12#1 ----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||