cluster # 1219

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Anopheles gambiae
cluster # 1219 cluster # 1219 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1219#0 length = 695 sequences # 1

consensus_1219#1 length = 575 sequences # 1

consensusID : consensus_1219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [CCGCGGACGCGTGGGCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGATCGAGCGGCTCGAGATTAGCGACGGCGAGCACGACAAAACCCGCCGGATCGTGACGCTCGAGAACTGCGTCAAGATAGTGCTGGACCAGCCGCCCCAGAACACAATCAACATCGTCTCGAAGACGGGCCAGATACAGCTGTACTCGCCGGACGAGGCGCTCGCCCGCCAGTGGACGAACGCGCTGCAGATCGTCGCGTTCCGGGACAAGTCCGGCCAGGGGGCGCCGCCGCCCCCGCCCCGCCCGAACACGATCGAGGAGGACAACGACCTCTACTGCTCGTCGTACAGCGAGGGCATCTACACGGTGACGCTCATCCCGACCGACGCCTCGATCAAGAACGGGCTCGAGCCGACGATGTACACGCTCGAGCTCGGGCAGACCGACATGCGGCTGAAGTGCTACGAGGACGAGAGCGTCACGGTGGCGGTGTGGCCGTACCGCTACATCCGCAAGTACGGCTACCGGGAGGGCAAGTTTACGTTCGA]

[+] EMBL BM615186             [CCGCGGACGCGTGGGCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGATCGAGCGGCTCGAGATTAGCGACGGCGAGCACGACAAAACCCGCCGGATCGTGACGCTCGAGAACTGCGTCAAGATAGTGCTGGACCAGCCGCCCCAGAACACAATCAACATCGTCTCGAAGACGGGCCAGATACAGCTGTACTCGCCGGACGAGGCGCTCGCCCGCCAGTGGACGAACGCGCTGCAGATCGTCGCGTTCCGGGACAAGTCCGGCCAGGGGGCGCCGCCGCCCCCGCCCCGCCCGAACACGATCGAGGAGGACAACGACCTCTACTGCTCGTCGTACAGCGAGGGCATCTACACGGTGACGCTCATCCCGACCGACGCCTCGATCAAGAACGGGCTCGAGCCGACGATGTACACGCTCGAGCTCGGGCAGACCGACATGCGGCTGAAGTGCTACGAGGACGAGAGCGTCACGGTGGCGGTGTGGCCGTACCGCTACATCCGCAAGTACGGCTACCGGGAGGGCAAGTTTACGTTCGA]




>consensus_1219#0
CCGCGGACGCGTGGGCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGA
CGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATAT
CTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGT
CAGCTGTTCAAGGCGAGCCGCCACGGGATCGAGCGGCTCGAGATTAGCGACGGCGAGCAC
GACAAAACCCGCCGGATCGTGACGCTCGAGAACTGCGTCAAGATAGTGCTGGACCAGCCG
CCCCAGAACACAATCAACATCGTCTCGAAGACGGGCCAGATACAGCTGTACTCGCCGGAC
GAGGCGCTCGCCCGCCAGTGGACGAACGCGCTGCAGATCGTCGCGTTCCGGGACAAGTCC
GGCCAGGGGGCGCCGCCGCCCCCGCCCCGCCCGAACACGATCGAGGAGGACAACGACCTC
TACTGCTCGTCGTACAGCGAGGGCATCTACACGGTGACGCTCATCCCGACCGACGCCTCG
ATCAAGAACGGGCTCGAGCCGACGATGTACACGCTCGAGCTCGGGCAGACCGACATGCGG
CTGAAGTGCTACGAGGACGAGAGCGTCACGGTGGCGGTGTGGCCGTACCGCTACATCCGC
AAGTACGGCTACCGGGAGGGCAAGTTTACGTTCGA

consensusID : consensus_1219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [CCGCAAAGGGAAGCGAAAACGAGCGAGCGCACGCCCAAGGCAAGGCACGCAGAGGCTTGCAGAGGGGCAGACAATCGGTCCCAGTGCGCACACGGGTTAGCAGCGATCATTGTGTGGCCCACGGCGCCACGGGCACTGTCTTTGAGGGGCCATTAAGGGCCTAGTAGCCCTGCCTGTCACTCCGGACCCGAAACCCGTGTTGGATCTGTTTTTTGTTGGTGTTTTTTTTTCTTTCGCTTCAACCCTACCACCCCCGCATTCAGCCCTCCCTCCGCTGGCATCCCTTTTGTGAGTGTGGTAAAGTGCGCGCGGGGGGCGGGAGGGGCGGGTCCACATGGTATCCCCCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGCATCGAGCGGCTCGAGATTAGCGACGGCGAGCACGACA]

[+] EMBL BM612544             [CCGCAAAGGGAAGCGAAAACGAGCGAGCGCACGCCCAAGGCAAGGCACGCAGAGGCTTGCAGAGGGGCAGACAATCGGTCCCAGTGCGCACACGGGTTAGCAGCGATCATTGTGTGGCCCACGGCGCCACGGGCACTGTCTTTGAGGGGCCATTAAGGGCCTAGTAGCCCTGCCTGTCACTCCGGACCCGAAACCCGTGTTGGATCTGTTTTTTGTTGGTGTTTTTTTTTCTTTCGCTTCAACCCTACCACCCCCGCATTCAGCCCTCCCTCCGCTGGCATCCCTTTTGTGAGTGTGGTAAAGTGCGCGCGGGGGGCGGGAGGGGCGGGTCCACATGGTATCCCCCTGAGACGGGCGGGTGCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGCATCGAGCGGCTCGAGATTAGCGACGGCGAGCACGACA]




>consensus_1219#1
CCGCAAAGGGAAGCGAAAACGAGCGAGCGCACGCCCAAGGCAAGGCACGCAGAGGCTTGC
AGAGGGGCAGACAATCGGTCCCAGTGCGCACACGGGTTAGCAGCGATCATTGTGTGGCCC
ACGGCGCCACGGGCACTGTCTTTGAGGGGCCATTAAGGGCCTAGTAGCCCTGCCTGTCAC
TCCGGACCCGAAACCCGTGTTGGATCTGTTTTTTGTTGGTGTTTTTTTTTCTTTCGCTTC
AACCCTACCACCCCCGCATTCAGCCCTCCCTCCGCTGGCATCCCTTTTGTGAGTGTGGTA
AAGTGCGCGCGGGGGGCGGGAGGGGCGGGTCCACATGGTATCCCCCTGAGACGGGCGGGT
GCGCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGGAC
GAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGTCGCAGAGTGGCTTTTCA
TGGCGTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGCAT
CGAGCGGCTCGAGATTAGCGACGGCGAGCACGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1219#0      CCGCGGACGCGTGGGCTGAGACGGGCGGGTGCGCAACAACAA-CAACAACAACGACGACG 59
consensus_1219#1      ------------------------------CCGCAAAGGGAAGCGAAAACGAGCGAGCGC 30
                                                     *****    ** * * *** *    *   

consensus_1219#0      ACGGTCACTCGGACGCGCGCGCACGATGGACGAGGAG--GAAAGCCCGTTCCTGTCCGGA 117
consensus_1219#1      ACGCCCAAGGCAAGGCACGCAGAGGCTTGCAGAGGGGCAGACAATCGGTCCCAGTGCGCA 90
                      ***  **     * ** ***  * * * *  **** *  ** *  * ** ** ** ** *

consensus_1219#0      TATC--TTACCGTCAAGTCGCAGAGTGGCTTTTCATGGCGTGTCACCAAAAAGGTCAAAT 175
consensus_1219#1      CACGGGTTAGCAGCGA-TCATTGTGTGGCC---CACGGCG-----CCA-------CGGGC 134
                       *    *** *  * * **   * *****    ** ****     ***       *    

consensus_1219#0      ACTGTCAGCTGTTCAAGGCGAGCCGCCACGGGATCGAGCGGCTCGAGATTAGCGACGGCG 235
consensus_1219#1      ACTGTC-----TTTGAG--GGGCCATTA-AGGGCCTAGTAGCCCTGCCT--GTCACTCCG 184
                      ******     **  **  * ***   *  **  * **  ** *    *  *  **  **

consensus_1219#0      AGCACGACAAAACCCGCCGGATCG--TGACGCTCGAGAACTGCGTCAAGATAGTGCTGGA 293
consensus_1219#1      GACCCGA-AACCCGTGTTGGATCTGTTTTTTGTTGGTGTTTTTTTTTCTTTCGCTTCAAC 243
                        * *** **  *  *  *****   *     * *     *   *     * *       

consensus_1219#0      CCAGCCGCCCCAGAACACAATCAACAT--------CGTCTCGAAGACGGGCCAGATACAG 345
consensus_1219#1      CCTACCACCCCCGCATTCAGCCCTCCCTCCGCTGGCATCCCTTTTGTGAGTGTGGTAAAG 303
                      **  ** **** * *  **  *  *          * ** *      * *   * ** **

consensus_1219#0      CTGTACTCGCCGGACGAGGCGCTCGCCCGCCAGTGGACGAACGCGCTGCAGATCGTCGCG 405
consensus_1219#1      -TGCGCGCGGGGGGCGGGAGGGGCGGGTCCACATGGT--ATCCCCCTG-AGACGGGCGGG 359
                       **  * **  ** ** *  *  **    *   ***   * * * *** ***  * ** *

consensus_1219#0      TTCCGGGACAAGTCCGGCCAGGG-GGCGCCGCCGCCCCCGCCC-CGCCCGAACACGATCG 463
consensus_1219#1      TGC-GCAACAACAACAACAACAACGACGACGACGGTCACTCGGACGCGCGCGCACGATGG 418
                      * * *  ****   *  * *    * ** ** **  * * *   *** **  ****** *

consensus_1219#0      AGGAGGACAACGACCTCTACTGCTCGTCGTACAGCGAGGGCATCTACACGGTGACGCTCA 523
consensus_1219#1      ACGAGGAGGAAAGCCCGTTCCTGTCCGGATATCTTACCGTCAAGT-CGCAGAGTGGCTTT 477
                      * *****  *   **  * *   **    **       * **  * * * * *  ***  

consensus_1219#0      TCCCGACCGACGCCTCGATCAAGAACGGGCTCGAGCCGACGATGTACACGCTCGAGCTCG 583
consensus_1219#1      TCATGGC--GTGTCACCAAAAAGGTCAAATACTGTCAGCTGTTCAAGGCGAGCCGCCACG 535
                      **  * *    * * * *  ***  *     *   * *  * *  *  **  *   * **

consensus_1219#0      GGCAGACCGACATGCGGCTGAAGTGCTACGAGGACGAGAGCGTCACGGTGGCGGTGTGGC 643
consensus_1219#1      GGC--ATCGA---GCGGCTCGAGATTAGCGACGGCGAGCACGACA--------------- 575
                      ***  * ***   ******  **     *** * ****  ** **               

consensus_1219#0      CGTACCGCTACATCCGCAAGTACGGCTACCGGGAGGGCAAGTTTACGTTCGA 695
consensus_1219#1      ----------------------------------------------------