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Anopheles gambiae
cluster # 1250 cluster # 1250       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1250#0 length = 639 sequences # 1  
consensus_1250#1 length = 623 sequences # 1  

consensusID : consensus_1250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence
                              [CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG]

[+] EMBL BM598783             [CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG]


>consensus_1250#0 CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTG CGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATA CTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTG TGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTG CTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCG ATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGC CGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAG GAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAA GACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGA AAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTG TTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG



consensusID : consensus_1250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence
                              [CCGCGGACGCGTGGGCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC]

[+] EMBL BM586253             [CCGCGGACGCGTGGGCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC]


>consensus_1250#1 CCGCGGACGCGTGGGCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAA GGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTTTCCGGCGACTTTACCCT CAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCC GCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCT GTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGC GAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATAT CGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCA GTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTA CCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAG TTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAACTCGGGCGA CTACGAAATACTATACTGGAATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1250#0      CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTG 60
consensus_1250#1      -------------------CCGCGGACGCGTGGG-CGTCGAAGCACACTTCGGAGCGGTG 40
                                          *  **  *    *  *************************

consensus_1250#0      CGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATA 120
consensus_1250#1      CGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATA 100
                      ************************************************************

consensus_1250#0      CTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTG 180
consensus_1250#1      CTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTG 160
                      ** *********************************************************

consensus_1250#0      TGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTG 240
consensus_1250#1      TGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTG 220
                      ************************************************************

consensus_1250#0      CTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCG 300
consensus_1250#1      CTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCG 280
                      ************************************************************

consensus_1250#0      ATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGC 360
consensus_1250#1      ATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGC 340
                      ***************************** ******************************

consensus_1250#0      CGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAG 420
consensus_1250#1      CGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAG 400
                      ************************************ ***********************

consensus_1250#0      GAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAA 480
consensus_1250#1      GAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAA 460
                      ************************************************************

consensus_1250#0      GACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGA 540
consensus_1250#1      GACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGA 520
                      ************************************************************

consensus_1250#0      AAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTG 600
consensus_1250#1      AAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTG 580
                      ************************************************************

consensus_1250#0      TTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG---- 639
consensus_1250#1      TTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC 623
                      *********** ***************************    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)