cluster # 1261

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Anopheles gambiae
cluster # 1261 cluster # 1261 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1261#0 length = 737 sequences # 1

consensus_1261#1 length = 464 sequences # 1

consensusID : consensus_1261#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 737
fasta sequence

                              [GTGCAAGTTGCCGTGGCATATAAGGGAATCATCGGCTGTGTTTTTCATCCATCGCTGGAAGTGTTAGTGTCTCCAAAGTGTTGTCGGAAAGTGACTGCAGAAACAAGTGACAACGCTGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTGTGCGAAAAGTGACTGACTGTGCAGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGATTTTTTGCCATCAAAAAGGGTCGGTCGAGTTGAAGTCAGACAAAAACACAACCCTCCTCCCCCTAAAACAGCACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACCAACTACATCCGCAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGCGATGCAGATTCCGACATTGGCGGGCGTCTCGGGCTGTGGCAGGTGTGCCAGAAAGACGATCTTACCGATAGCTGTACCGGCCGGCTGGAAGAACTGCTGGAAATGCAATCCATCGCGTTTCAGGTTGCAACAGTGTTTTGCGGGCTGGCTGTGGCCACTTCCGTGCTGGCGATCTGCTGCCTACTGCTGATGGTGTTCATGAAGTCAACGACCGTCTTTCACATCTGCGGCTGGATGCAGATGCTTTCCGCTCTCTGCATGGTGATT]

[+] EMBL BX625331             [GTGCAAGTTGCCGTGGCATATAAGGGAATCATCGGCTGTGTTTTTCATCCATCGCTGGAAGTGTTAGTGTCTCCAAAGTGTTGTCGGAAAGTGACTGCAGAAACAAGTGACAACGCTGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTGTGCGAAAAGTGACTGACTGTGCAGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGATTTTTTGCCATCAAAAAGGGTCGGTCGAGTTGAAGTCAGACAAAAACACAACCCTCCTCCCCCTAAAACAGCACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACCAACTACATCCGCAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGCGATGCAGATTCCGACATTGGCGGGCGTCTCGGGCTGTGGCAGGTGTGCCAGAAAGACGATCTTACCGATAGCTGTACCGGCCGGCTGGAAGAACTGCTGGAAATGCAATCCATCGCGTTTCAGGTTGCAACAGTGTTTTGCGGGCTGGCTGTGGCCACTTCCGTGCTGGCGATCTGCTGCCTACTGCTGATGGTGTTCATGAAGTCAACGACCGTCTTTCACATCTGCGGCTGGATGCAGATGCTTTCCGCTCTCTGCATGGTGATT]




>consensus_1261#0
GTGCAAGTTGCCGTGGCATATAAGGGAATCATCGGCTGTGTTTTTCATCCATCGCTGGAA
GTGTTAGTGTCTCCAAAGTGTTGTCGGAAAGTGACTGCAGAAACAAGTGACAACGCTGGT
TCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTG
TGCGAAAAGTGACTGACTGTGCAGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGAT
TTTTTGCCATCAAAAAGGGTCGGTCGAGTTGAAGTCAGACAAAAACACAACCCTCCTCCC
CCTAAAACAGCACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACG
CGACCAACTACATCCGCAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTT
GCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGCGATGCAGATT
CCGACATTGGCGGGCGTCTCGGGCTGTGGCAGGTGTGCCAGAAAGACGATCTTACCGATA
GCTGTACCGGCCGGCTGGAAGAACTGCTGGAAATGCAATCCATCGCGTTTCAGGTTGCAA
CAGTGTTTTGCGGGCTGGCTGTGGCCACTTCCGTGCTGGCGATCTGCTGCCTACTGCTGA
TGGTGTTCATGAAGTCAACGACCGTCTTTCACATCTGCGGCTGGATGCAGATGCTTTCCG
CTCTCTGCATGGTGATT

consensusID : consensus_1261#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [AGATCGCCCCAGGTNCCGTGGCATATTAAGGGAATCATCGGCTGTGTTTTTCATCCACCGCTGCAGTGTTAGTGTCTCCAAAGTGTCGTCGGAAAGTGACTGCACAAACAAGTGACAACGCAGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTGTGCGAAAAGTGACTGACTAACTGCCGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGATTTTTTGCCATCAAAAAGGTACAAAAACACAAACCCCCCCCCCCCCTAAAACAGACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACAACTACATCCGAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGGATGCAAT]

[+] EMBL AL932698             [AGATCGCCCCAGGTNCCGTGGCATATTAAGGGAATCATCGGCTGTGTTTTTCATCCACCGCTGCAGTGTTAGTGTCTCCAAAGTGTCGTCGGAAAGTGACTGCACAAACAAGTGACAACGCAGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTGTGCGAAAAGTGACTGACTAACTGCCGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGATTTTTTGCCATCAAAAAGGTACAAAAACACAAACCCCCCCCCCCCCTAAAACAGACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACAACTACATCCGAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGGATGCAAT]




>consensus_1261#1
AGATCGCCCCAGGTNCCGTGGCATATTAAGGGAATCATCGGCTGTGTTTTTCATCCACCG
CTGCAGTGTTAGTGTCTCCAAAGTGTCGTCGGAAAGTGACTGCACAAACAAGTGACAACG
CAGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTT
TCTTGTGCGAAAAGTGACTGACTAACTGCCGCTTCTGCATACGATCACGTGCGTCCTCTA
GATCGATTTTTTGCCATCAAAAAGGTACAAAAACACAAACCCCCCCCCCCCCTAAAACAG
ACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACAACTACA
TCCGAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCAT
CAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGGATGCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1261#0      -----GTGCAAGTTGCCGTGGCATAT-AAGGGAATCATCGGCTGTGTTTTTCATCCATCG 54
consensus_1261#1      AGATCGCCCCAGGTNCCGTGGCATATTAAGGGAATCATCGGCTGTGTTTTTCATCCACCG 60
                           *  * ** * *********** ****************************** **

consensus_1261#0      CTGGAAGTGTTAGTGTCTCCAAAGTGTTGTCGGAAAGTGACTGCAGAAACAAGTGACAAC 114
consensus_1261#1      CTGCA-GTGTTAGTGTCTCCAAAGTGTCGTCGGAAAGTGACTGCACAAACAAGTGACAAC 119
                      *** * ********************* ***************** **************

consensus_1261#0      GCTGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGT 174
consensus_1261#1      GCAGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGT 179
                      ** *********************************************************

consensus_1261#0      TTCTTGTGCGAAAAGTGACTGACTG--TGCAGCTTCTGCATACGATCACGTGCGTCCTCT 232
consensus_1261#1      TTCTTGTGCGAAAAGTGACTGACTAACTGCCGCTTCTGCATACGATCACGTGCGTCCTCT 239
                      ************************   *** *****************************

consensus_1261#0      AGATCGATTTTTTGCCATCAAAAAGGGTCGGTCGAGTTGAAGTCAGACAAAAACACAACC 292
consensus_1261#1      AGATCGATTTTTTGCCATCAAAAAGG-----------------TACAAAAACACAAACCC 282
                      **************************                  * * *** *** * **

consensus_1261#0      CTCCTCCCCCTAAAACAGCACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCA 352
consensus_1261#1      CCCCCCCCCCTAAAACAG-ACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCA 341
                      * ** ************* *****************************************

consensus_1261#0      CATGTACGCGACCAACTACATCCGCAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTT 412
consensus_1261#1      CATGTACGCGAC-AACTACATCCG-AACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTT 399
                      ************ *********** ***********************************

consensus_1261#0      CAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGCGA 472
consensus_1261#1      CAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGG-GA 458
                      ********************************************************* **

consensus_1261#0      TGCAGATTCCGACATTGGCGGGCGTCTCGGGCTGTGGCAGGTGTGCCAGAAAGACGATCT 532
consensus_1261#1      TGCAAT------------------------------------------------------ 464
                      ****                                                        

consensus_1261#0      TACCGATAGCTGTACCGGCCGGCTGGAAGAACTGCTGGAAATGCAATCCATCGCGTTTCA 592
consensus_1261#1      ------------------------------------------------------------
                                                                                  

consensus_1261#0      GGTTGCAACAGTGTTTTGCGGGCTGGCTGTGGCCACTTCCGTGCTGGCGATCTGCTGCCT 652
consensus_1261#1      ------------------------------------------------------------
                                                                                  

consensus_1261#0      ACTGCTGATGGTGTTCATGAAGTCAACGACCGTCTTTCACATCTGCGGCTGGATGCAGAT 712
consensus_1261#1      ------------------------------------------------------------
                                                                                  

consensus_1261#0      GCTTTCCGCTCTCTGCATGGTGATT 737
consensus_1261#1      -------------------------