|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[GGCAGAATCGGCACGAGGTCTGATGTTGGAGCGGCGGCAACATGCCTGTTTTTTTTTTTTTGCAGTTCGGAAGTACGATCGACAAATATTACAGCCTAATTGCGTGTGAAACCGTTTAACGACCTTGAAACGAAAAGAAGTGCAAACAAAAGTGCAGTGAGCAAACAGCCAAAAGAACAAACAATCAACGATACATATATATATATATATACACATATATATATATATCAACGATACAAGCGACACCGAAAAGCAATGACCAGCAAGCAAAGCAACAAGCAAACGATGCTGCCGGGATCGTCCCTGGTGGTGCTGGTGGCGCTGGCGGGGCTGGTGATGGTGCTGCTGCCCGTCGGTACGGTGCCGGCCGTCCACGCCCAGCAGTCGGACCGGGCGGGCGCACTGATCGAACCGAACGAAGCCCTGTACGGATGCCCGGTACGCGCGGATCGCGAAGGAGAAGCGCGGAATCGGCCCGGNCGCCGGGCGACGAGCACCGAGGAGGAGCATGAGTCGGAAGAGTTCTANCGGGCNCTTTCCGAANTCGAGAATAACGGCAACGTGGGGCGACGGGNGTGAATTCCCGGGGGAAGGCCTTGGAAGAGCAAACGGTTGCGCGGGGCAAGGGAACAGTTGCCGTTAAGCACCGGGTTGGGCNTAGANGANTTCCCGGGGNANNCNTCCACGNNGTCAGACGGAGCAGAGGTCCCGGCCACNTGCCGTNTGCAAGTTGGGGACNGAGG]
[+] EMBL BX468392 [GGCAGAATCGGCACGAGGTCTGATGTTGGAGCGGCGGCAACATGCCTGTTTTTTTTTTTTTGCAGTTCGGAAGTACGATCGACAAATATTACAGCCTAATTGCGTGTGAAACCGTTTAACGACCTTGAAACGAAAAGAAGTGCAAACAAAAGTGCAGTGAGCAAACAGCCAAAAGAACAAACAATCAACGATACATATATATATATATATACACATATATATATATATCAACGATACAAGCGACACCGAAAAGCAATGACCAGCAAGCAAAGCAACAAGCAAACGATGCTGCCGGGATCGTCCCTGGTGGTGCTGGTGGCGCTGGCGGGGCTGGTGATGGTGCTGCTGCCCGTCGGTACGGTGCCGGCCGTCCACGCCCAGCAGTCGGACCGGGCGGGCGCACTGATCGAACCGAACGAAGCCCTGTACGGATGCCCGGTACGCGCGGATCGCGAAGGAGAAGCGCGGAATCGGCCCGGNCGCCGGGCGACGAGCACCGAGGAGGAGCATGAGTCGGAAGAGTTCTANCGGGCNCTTTCCGAANTCGAGAATAACGGCAACGTGGGGCGACGGGNGTGAATTCCCGGGGGAAGGCCTTGGAAGAGCAAACGGTTGCGCGGGGCAAGGGAACAGTTGCCGTTAAGCACCGGGTTGGGCNTAGANGANTTCCCGGGGNANNCNTCCACGNNGTCAGACGGAGCAGAGGTCCCGGCCACNTGCCGTNTGCAAGTTGGGGACNGAGG]
consensusID : consensus_128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CCGGATCGGTCGGTTGGTTTTTGTCTCTGCGCGCCCGTCCCAAGCCATCACTGGCTTGACGTACCGGTGTATCTTTACCAGTGTGTGTGTGTGTGTGTGTTTCTGTGTGTTTATTACGTGTTTCTTTGACATCTCCCGCAAACCGAAACAAGTGCAAATTCGGAGTTTTTGGTTAGTTGCCCGTGCCACGGGTTGTGATATCCCTGGAGTCCCTGGAGTTCCAGGCGGTGCTGTGCTAAACACAGAGTGCAACGCAAACATCTCCCCCCCCGGGGGGATCTGCTATCAATGCTCAGAGACGAGCGAGTCTTCAAATACCTCGACCGTTAAATCCTGAACTAAATCCTGAACTCCAATCGGTTGCAGTTATCGCGGAGGACCTAATATCGTATTCCAGCAGTTGTGTGTTCTCCATCAAACAGCTTCCCAAATACAAATATTACAGCCCAATTGCGTGTGAAACCGTTTAACGACCTTGAAACGAAAAGAAGTGCAAACAAAAGTGCAGTGAGCAAACAGCCAAAAGAACAAACAATCAACGATACATATATATATATATACACATATATATATCAACGATACAAGCGACACCGAAAAGCAATGACCAGCAAGCAAAGCAACAAGC]
[+] EMBL BM643606 [CCGGATCGGTCGGTTGGTTTTTGTCTCTGCGCGCCCGTCCCAAGCCATCACTGGCTTGACGTACCGGTGTATCTTTACCAGTGTGTGTGTGTGTGTGTGTTTCTGTGTGTTTATTACGTGTTTCTTTGACATCTCCCGCAAACCGAAACAAGTGCAAATTCGGAGTTTTTGGTTAGTTGCCCGTGCCACGGGTTGTGATATCCCTGGAGTCCCTGGAGTTCCAGGCGGTGCTGTGCTAAACACAGAGTGCAACGCAAACATCTCCCCCCCCGGGGGGATCTGCTATCAATGCTCAGAGACGAGCGAGTCTTCAAATACCTCGACCGTTAAATCCTGAACTAAATCCTGAACTCCAATCGGTTGCAGTTATCGCGGAGGACCTAATATCGTATTCCAGCAGTTGTGTGTTCTCCATCAAACAGCTTCCCAAATACAAATATTACAGCCCAATTGCGTGTGAAACCGTTTAACGACCTTGAAACGAAAAGAAGTGCAAACAAAAGTGCAGTGAGCAAACAGCCAAAAGAACAAACAATCAACGATACATATATATATATATACACATATATATATCAACGATACAAGCGACACCGAAAAGCAATGACCAGCAAGCAAAGCAACAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_128#0 GGCAGAATCGGCACGAGGTCTGATGTTGGAGCGGCGGCAACATGCCTGTTTTTTTTTTTT 60
consensus_128#1 ------------------------------------------------------------
consensus_128#0 TGCAGTTCGGAAGTACGATCGACAAATATTACAGCCTAATTGCGTGTGAAACCGTTTAAC 120
consensus_128#1 ----------------------------------------------CCGGATCGGTCGGT 14
* ** *
consensus_128#0 GACCTTGAAACGAAAAGAAGTGCAAACAAAAGTGCAGTGAGCAAACAGCCAAAAGAACAA 180
consensus_128#1 TGGTTTTTGTCTCTGCGCGCCCGTCCCAAGCCATCACTGGCTTGACGTACCGGTGTATCT 74
** * * *** ** ** ** * * *
consensus_128#0 ACAATCAACGATACATATATATATATATATACACATATAT-ATATATATCAACGATACAA 239
consensus_128#1 TTACCAGTGTGTGTGTGTGTGTGTGTTTCTGTGTGTTTATTACGTGTTTCTTTGACATCT 134
* * * * * * * * * * * *** * * * ** ** *
consensus_128#0 GCGACACCGAAAAGCAATGACCAGCAAGCAAAGCAACAAGCAAACGATGCTGCCGGGATC 299
consensus_128#1 CCCGCAAACCGAAACAAGTGCAAAT--TCGGAGTTTTTGGTTAGT--TGCCCGTGCCACG 190
* ** ** *** * * * ** * * *** * *
consensus_128#0 GTCCCTGGTGGTGCTGGTGGCGCTGGCGGGGCTGGTGATGGTGCTGCTGCCCGTCG-GTA 358
consensus_128#1 GGTTGTGATATCCCTGGAGTCCCTGGAGTTCCAGGCGGTGCTG-TGCTAAACACAGAGTG 249
* ** * **** * * **** * * ** * ** ** **** * * **
consensus_128#0 CGGTGCCGGCCGTCCACGCCCAGCAGTCGGACCGGGCGGGCGCACTGATCGAACCGAACG 418
consensus_128#1 CAACGCAAACATCTCCCCCCC--CGGGGGGATCTGCTATCAATGCTCA--GAGACGAGCG 305
* ** * * * *** * * *** * * ** * ** *** **
consensus_128#0 AAGCCCTGTACGGATGCCCGGTACGCGCGGATCGCGAAGGAGAAGCGCGGAATCGGCCCG 478
consensus_128#1 AGTCTT----CAAATACCTCGACCGT-TAAATCCTGAACTA-AATCCTGAACTCCAATCG 359
* * * ** ** * ** *** *** * ** * * * ** **
consensus_128#0 GNCGCCG--GGCGACGAGCACCGAGGAGGAG----CATGAGTCGGAAGAGTTCTANCGGG 532
consensus_128#1 GTTGCAGTTATCGCGGAGGACCTAATATCGTATTCCAGCAGTTGTGTGTTCTCCATCAAA 419
* ** * ** *** *** * * ** *** * * ** * *
consensus_128#0 CN-CTTTCCGAANTCGAGAATAACGGC--AACGTGGGGCGACGGGNGTGAATTCCCGGGG 589
consensus_128#1 CAGCTTCCCAAATACAAATATTACAGCCCAATTGCGTGTGAAACCGTTTAACGACCTTGA 479
* *** ** ** * * ** ** ** ** * * ** * ** ** *
consensus_128#0 GAAGGCCTTGGAAGAGCAAACGGTTGCGCGGGGCAAGGGAACAGTTGCCGTTAAGCACCG 649
consensus_128#1 AACGAA--AAGAAGTGCAAACAAAAGTGCAG--TGAGCAAACAGCCA--AAAGAACAAAC 533
* * **** ****** * ** * ** ***** * **
consensus_128#0 GGTTGGGCNTAGANGANTTCCCGGGGNANNCNTCCACGNNGTCAGACGGAGCAGAGGTCC 709
consensus_128#1 AATCAACGATACATATATATATATA-TACACATATAT-ATATCAACGATACAAGCGACAC 591
* ** * * * * * * *** * ** * *
consensus_128#0 CGGCCACNTGCCGTNTGCAAGTTGGGGACNGAGG 743
consensus_128#1 CGAAAAGCAATGACCAGCAAGCAAAGCAACAAGC 625
** * ***** * * **
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||