These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [AGGCCAGNNCTCGGCTTTAAGGGGAATGATAAGCACCGCAAAGTCCTCTGGATGGTATTTATTTTCATATCGTTTATTCGCTAGTTTTGAGTTATGGACTAAATGAGAGCAAAAGAGAGGGAGGTCGATACTAGCTAAGGAATGCACATAAAGCCAAGCAGACACTTTAATCACGCACCAATGCGATCTATTTATTGACACAGAACACAGAACTAAATATTAAAAATAAGCGCAACAAGCAGCTGCATCGATCGCTGAGAAATACTCAGCCAAAGTTGACTACGTAGAACTATGTTCTAATAGCAGGGCAAATAAGTTTGTGCGAATTTTACATTTCCTTCCCGAATCGTATTGNGTATACCTCCCGTCTCTGTGCTCTGTATATCACTGCTGTGTTGGGTNGTCTGCTTCATTGCACAACAGGAGAGGGTGTCTA] [+] EMBL BX469102 [AGGCCAGNNCTCGGCTTTAAGGGGAATGATAAGCACCGCAAAGTCCTCTGGATGGTATTTATTTTCATATCGTTTATTCGCTAGTTTTGAGTTATGGACTAAATGAGAGCAAAAGAGAGGGAGGTCGATACTAGCTAAGGAATGCACATAAAGCCAAGCAGACACTTTAATCACGCACCAATGCGATCTATTTATTGACACAGAACACAGAACTAAATATTAAAAATAAGCGCAACAAGCAGCTGCATCGATCGCTGAGAAATACTCAGCCAAAGTTGACTACGTAGAACTATGTTCTAATAGCAGGGCAAATAAGTTTGTGCGAATTTTACATTTCCTTCCCGAATCGTATTGNGTATACCTCCCGTCTCTGTGCTCTGTATATCACTGCTGTGTTGGGTNGTCTGCTTCATTGCACAACAGGAGAGGGTGTCTA] consensusID : consensus_1328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [TCTCTTTTGCTCTCATTTAGTCCATAACTCAAAACTAGCGAATAAACGATATGAAAATAAATACCATCCAGAGGACTTTCGGTGCTTATCATTCCCATTACGAAGCACTTTTTACAGCTTTTACAGGCTCTCTTACACACACACACACAACATAACCAAGGCTTACGATGGAGCTGCGTTGCAGCTACAGTCTAGAAATGAGAAACCAGATCTATGGTGATAGTAGTATGTAGGTTGATATAATGGTTGGCCCAAGCCAAAGCCAACGTGTTAGCCTATAAGCTGCGCATATGTGTTACTGTGGTAGTGTGCTACTCGGCATTTGTTCGCTAACCGAAGAAGAAACCGAACGGTGTCTCTACCTCTATATCGAATTTGAGGCCCTGCTGGTTGTCTTTCTCAAGTGAAACCAGCTGATTTCCAGTGGTGCCACG] [+] EMBL AGA284733 [TCTCTTTTGCTCTCATTTAGTCCATAACTCAAAACTAGCGAATAAACGATATGAAAATAAATACCATCCAGAGGACTTTCGGTGCTTATCATTCCCATTACGAAGCACTTTTTACAGCTTTTACAGGCTCTCTTACACACACACACACAACATAACCAAGGCTTACGATGGAGCTGCGTTGCAGCTACAGTCTAGAAATGAGAAACCAGATCTATGGTGATAGTAGTATGTAGGTTGATATAATGGTTGGCCCAAGCCAAAGCCAACGTGTTAGCCTATAAGCTGCGCATATGTGTTACTGTGGTAGTGTGCTACTCGGCATTTGTTCGCTAACCGAAGAAGAAACCGAACGGTGTCTCTACCTCTATATCGAATTTGAGGCCCTGCTGGTTGTCTTTCTCAAGTGAAACCAGCTGATTTCCAGTGGTGCCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1328#0 AGGCCAGNNCTCGGCTTTAAGGGGAATGATAAGCACCGCAAAGTCCTCTGGATGGTATTT 60 consensus_1328#1 -----TCTCTTTTGCTCTCATTTAGTCCATAA-CTCAAAACTAGCGAATAAACGATATGA 54 * *** * * **** * * * * * * * *** consensus_1328#0 ATTTTCATATCGTTTATTCGCTAGTTTTGAGTTATGGACTAAATGA--GAGCAAAAGAGA 118 consensus_1328#1 AAATAAATACCATCCAGAGGACTTTCGGTGCTTATCATTCCCATTACGAAGCACTTTTTA 114 * * *** * * * * * **** ** * **** * consensus_1328#0 GGGAGGTCG-ATACTAGCTAAGGAATGCACATAAAGCCAAGCAGACACTTTAATCACGCA 177 consensus_1328#1 CAGCTTTTACAGGCTCTCTTACACACACACACACAACATAACCAAGGCTT--ACGATGGA 172 * * * ** ** * * **** * * * * * * *** * * * * consensus_1328#0 CCAATGCGATCTATTTATTGACACAGAACACAGAACTAAATATTAAAAATAAGCGCAACA 237 consensus_1328#1 GC--TGCGTTGCAGCTACAGTCTAGAAATGAGAAACCAGATCT--ATGGTGATAGTAGTA 228 * **** * * ** * * ** *** * ** * * * * * * * consensus_1328#0 AGCAGCTGCATCGATCGCTGAGAAATACTCAGCCAAAGTTGACTACGTAGAACTATGTTC 297 consensus_1328#1 TGTAGGTTGATATAATGGTTGGC----CCAAGCCAAAGCCAAC-GTGTTAGCCTATAAGC 283 * ** * ** * * * * * ******** ** ** **** * consensus_1328#0 TAATAGCAGG-GCAAATAAGTTTGTGCGAATTTTACATTTCCTTCCCGAATCGTATTGNG 356 consensus_1328#1 TGCGCATATGTGTTACTGTGGTAGTGTGCTACTCGGCATTTGTTCGCTAACCG-AAGAAG 342 * * * * * * * * *** * * ** *** * ** ** * * consensus_1328#0 TATACCTCCCGTCTCTGTGC-TCTGTATATCACTGCTGTGTTGGGTNGTCTGCTTCATTG 415 consensus_1328#1 AAACCGAACGGTGTCTCTACCTCTATATCGAATTTGAGGCCCTGCTGGTTGTCTTTCTCA 402 * * * ** *** * * *** *** * * * * * ** *** * consensus_1328#0 CACAACAGGAGAGGGTGTCTA----------- 436 consensus_1328#1 AGTGAAACCAGCTGATTTCCAGTGGTGCCACG 434 * * ** * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||