These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [GCAGAATCGGCACGAGGNGAAAATACGGTCAGGAAATTAAAACAAAAAAAAGACATCTACACACTCTGGTACGTTACCGCAAAGTTTCGTGAAAAGTACACTATTTGTTGCTATTTTCTCGCTGCATGCAGAAGGCAAAGGTTTNCGTAAATCCGCTGCAATAACAGCACGAAAAACTTCTCGCAGCATCAACCAACTATTCAGCATCGTCTAACACTCACACACAAGCGATACGCACCGAATTCCCCCTCCGGTTGGGACACTCATATTTTGCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAACAATTAATAATTACATTTAAATAAGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGGGCACCGGCAACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAAGCCTAAANAGTGTTATGCGCTTNTAGCTATTTTAGCGAGCCCGTGCCCACACGTGCCCAATATGCGTGATGTTTAATGTTAGGTGTCGGTGCTGTNATAGTNATNGTTTCATTGTTGAAGACGAGTATGTGCTTTGACTTTTAATTCCCTNCCCTNTTTGTACCCGGGTACTCGGTNTCTCTGACTTGGTAGGGAACATGTTTGTATACGCCTTACTTTNATAGCTGGCTTCGTGACCGGAAGCAACCCGTTTTATCAGGGGGCCATGCAAATT] [+] EMBL BX468711 [GCAGAATCGGCACGAGGNGAAAATACGGTCAGGAAATTAAAACAAAAAAAAGACATCTACACACTCTGGTACGTTACCGCAAAGTTTCGTGAAAAGTACACTATTTGTTGCTATTTTCTCGCTGCATGCAGAAGGCAAAGGTTTNCGTAAATCCGCTGCAATAACAGCACGAAAAACTTCTCGCAGCATCAACCAACTATTCAGCATCGTCTAACACTCACACACAAGCGATACGCACCGAATTCCCCCTCCGGTTGGGACACTCATATTTTGCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAACAATTAATAATTACATTTAAATAAGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGGGCACCGGCAACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAAGCCTAAANAGTGTTATGCGCTTNTAGCTATTTTAGCGAGCCCGTGCCCACACGTGCCCAATATGCGTGATGTTTAATGTTAGGTGTCGGTGCTGTNATAGTNATNGTTTCATTGTTGAAGACGAGTATGTGCTTTGACTTTTAATTCCCTNCCCTNTTTGTACCCGGGTACTCGGTNTCTCTGACTTGGTAGGGAACATGTTTGTATACGCCTTACTTTNATAGCTGGCTTCGTGACCGGAAGCAACCCGTTTTATCAGGGGGCCATGCAAATT] consensusID : consensus_1329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [GCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAAAATTAATAATTAATTTAAATACGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGNGCACCGGCACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAACCTAAAATGTTATGCGCTTTTGCTTTTAACGAGCCCGTGCCACACGTGCCCAATATGCGTGATGTTTAATGTTGGTGTCGGNGCTGTTTTGTTTTGTTTATTGTTTTTTTTTTTTGCTTTGCTNTTAATTCC] [+] EMBL BX623321 [GCTTCACTTTATCGACTTCCGCAGAGCTTTCGGACGAGTATTAAAATTAATAATTAATTTAAATACGCGCGTCCGAAACCGGCACCGGCTACTGGCAGCGNGCACCGGCACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTTTCCCATTGTGTCGGAAGTGCTCTCTTCATCAACCTAAAATGTTATGCGCTTTTGCTTTTAACGAGCCCGTGCCACACGTGCCCAATATGCGTGATGTTTAATGTTGGTGTCGGNGCTGTTTTGTTTTGTTTATTGTTTTTTTTTTTTGCTTTGCTNTTAATTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1329#0 GCAGAATCGGCACGAGGNGAAAATACGGTCAGGAAATTAAAACAAAAAAAAGACATCTAC 60 consensus_1329#1 ------------------------------------------------------------ consensus_1329#0 ACACTCTGGTACGTTACCGCAAAGTTTCGTGAAAAGTACACTATTTGTTGCTATTTTCTC 120 consensus_1329#1 ------------------------------------------------------------ consensus_1329#0 GCTGCATGCAGAAGGCAAAGGTTTNCGTAAATCCGCTGCAATAACAGCACGAAAAACTTC 180 consensus_1329#1 ------------------------------------------------------------ consensus_1329#0 TCGCAGCATCAACCAACTATTCAGCATCGTCTAACACTCACACACAAGCGATACGCACCG 240 consensus_1329#1 ------------------------------------------------------------ consensus_1329#0 AATTCCCCCTCCGGTTGGGACACTCATATTTTGCTTCACTTTATCGACTTCCGCAGAGCT 300 consensus_1329#1 --------------------------------GCTTCACTTTATCGACTTCCGCAGAGCT 28 **************************** consensus_1329#0 TTCGGACGAGTATTAACAATTAATAATTACATTTAAATAAGCGCGTCCGAAACCGGCACC 360 consensus_1329#1 TTCGGACGAGTATTAA-AATTAATAATTA-ATTTAAATACGCGCGTCCGAAACCGGCACC 86 **************** ************ ********* ******************** consensus_1329#0 GGCTACTGGCAGCGGGCACCGGCAACCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTT 420 consensus_1329#1 GGCTACTGGCAGCGNGCACCGGCA-CCTCTCCGACCCTGGTGCGTTTGCGTCCACTGTTT 145 ************** ********* *********************************** consensus_1329#0 TCCCATTGTGTCGGAAGTGCTCTCTTCATCAAGCCTAAANAGTGTTATGCGCTTNTAGCT 480 consensus_1329#1 TCCCATTGTGTCGGAAGTGCTCTCTTCATCAA-CCTAAAA--TGTTATGCGCTTTTG--- 199 ******************************** ****** ************ * consensus_1329#0 ATTTTAGCGAGCCCGTGCCCACACGTGCCCAATATGCGTGATGTTTAATGTTAGGTGTCG 540 consensus_1329#1 CTTTTAACGAGCCCGTGCC-ACACGTGCCCAATATGCGTGATGTTTAATGTT-GGTGTCG 257 ***** ************ ******************************** ******* consensus_1329#0 GTGCTGTNATAGTNATNGTTTCATTGTTGAAGACGAGTATGTGCTTTGACTTTTAATTCC 600 consensus_1329#1 GNGCTGTTTTGTT--TTGTTT-ATTGTTT----TTTTTTTTTGCTTTG-CTNTTAATTCC 309 * ***** * * * **** ****** * * ******* ** ******** consensus_1329#0 CTNCCCTNTTTGTACCCGGGTACTCGGTNTCTCTGACTTGGTAGGGAACATGTTTGTATA 660 consensus_1329#1 ------------------------------------------------------------ consensus_1329#0 CGCCTTACTTTNATAGCTGGCTTCGTGACCGGAAGCAACCCGTTTTATCAGGGGGCCATG 720 consensus_1329#1 ------------------------------------------------------------ consensus_1329#0 CAAATT 726 consensus_1329#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||