cluster # 1371

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Anopheles gambiae
cluster # 1371 cluster # 1371 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1371#0 length = 712 sequences # 1

consensus_1371#1 length = 562 sequences # 1

consensusID : consensus_1371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [CCGGTGTAAGCACGCTCGAGAACTCGTTGCGTCCGTCTTGTCTTCGGTTCGGTTTGGGGTGTGGTGCGCGTTCAAAGGTTTAACCTGTTTTTTTTTCTTCTCTCCTGTGGATTCGAAAGCTTTCACACAACGCGTTGGATTTTGCAGTTCAATTTGTCGTCCCGTGCGTGTGCCCGTGAATTGTGCAATCAATTAAAGAGCGTGTGTGTTAAATTTTACCACTGAAAGAACCTCTCCCCGGGTGACGTGTTCAATATATTCGTGCTCCCTGCTTTCCTCGATCGTTCGCCGTTGCGTGCGTCTCTCCCCTCCCGCAGGTACGATCATCTTCTCCTCGGTGCCCCCATTTCGTGTGTACGTGCGCTTGTGGGCCCGTGTGTGTGCGTGTGTGGTGCGTCTACGCGTCCGTGTGTACTTTGCAGAGGCAATCCATCATTACTTAAGCGCTCCCCACGCGTACTTCGTACCGTACCTCCGATCCAAGTATGCGAAAGCCAAGAAGCAACCTGTCGACAATGGCTGGGCTGGGCGTCGTCTTGCTGGTAGGCATCATCGGCGGTCTAGTCGGCCCTGCCCGTGCCCAGCGAACGCCAACCATCTCTTACATCACGCAGGAGCAGATCAAGGACATTGGCGGTACGGTCGAGCTGGGAATGTTCGGTCCTGTACGCCAGCGACTACTCCGTCCACTGGGTGGAAGACCAGCAACGAC]

[+] EMBL BM581856             [CCGGTGTAAGCACGCTCGAGAACTCGTTGCGTCCGTCTTGTCTTCGGTTCGGTTTGGGGTGTGGTGCGCGTTCAAAGGTTTAACCTGTTTTTTTTTCTTCTCTCCTGTGGATTCGAAAGCTTTCACACAACGCGTTGGATTTTGCAGTTCAATTTGTCGTCCCGTGCGTGTGCCCGTGAATTGTGCAATCAATTAAAGAGCGTGTGTGTTAAATTTTACCACTGAAAGAACCTCTCCCCGGGTGACGTGTTCAATATATTCGTGCTCCCTGCTTTCCTCGATCGTTCGCCGTTGCGTGCGTCTCTCCCCTCCCGCAGGTACGATCATCTTCTCCTCGGTGCCCCCATTTCGTGTGTACGTGCGCTTGTGGGCCCGTGTGTGTGCGTGTGTGGTGCGTCTACGCGTCCGTGTGTACTTTGCAGAGGCAATCCATCATTACTTAAGCGCTCCCCACGCGTACTTCGTACCGTACCTCCGATCCAAGTATGCGAAAGCCAAGAAGCAACCTGTCGACAATGGCTGGGCTGGGCGTCGTCTTGCTGGTAGGCATCATCGGCGGTCTAGTCGGCCCTGCCCGTGCCCAGCGAACGCCAACCATCTCTTACATCACGCAGGAGCAGATCAAGGACATTGGCGGTACGGTCGAGCTGGGAATGTTCGGTCCTGTACGCCAGCGACTACTCCGTCCACTGGGTGGAAGACCAGCAACGAC]




>consensus_1371#0
CCGGTGTAAGCACGCTCGAGAACTCGTTGCGTCCGTCTTGTCTTCGGTTCGGTTTGGGGT
GTGGTGCGCGTTCAAAGGTTTAACCTGTTTTTTTTTCTTCTCTCCTGTGGATTCGAAAGC
TTTCACACAACGCGTTGGATTTTGCAGTTCAATTTGTCGTCCCGTGCGTGTGCCCGTGAA
TTGTGCAATCAATTAAAGAGCGTGTGTGTTAAATTTTACCACTGAAAGAACCTCTCCCCG
GGTGACGTGTTCAATATATTCGTGCTCCCTGCTTTCCTCGATCGTTCGCCGTTGCGTGCG
TCTCTCCCCTCCCGCAGGTACGATCATCTTCTCCTCGGTGCCCCCATTTCGTGTGTACGT
GCGCTTGTGGGCCCGTGTGTGTGCGTGTGTGGTGCGTCTACGCGTCCGTGTGTACTTTGC
AGAGGCAATCCATCATTACTTAAGCGCTCCCCACGCGTACTTCGTACCGTACCTCCGATC
CAAGTATGCGAAAGCCAAGAAGCAACCTGTCGACAATGGCTGGGCTGGGCGTCGTCTTGC
TGGTAGGCATCATCGGCGGTCTAGTCGGCCCTGCCCGTGCCCAGCGAACGCCAACCATCT
CTTACATCACGCAGGAGCAGATCAAGGACATTGGCGGTACGGTCGAGCTGGGAATGTTCG
GTCCTGTACGCCAGCGACTACTCCGTCCACTGGGTGGAAGACCAGCAACGAC

consensusID : consensus_1371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [CCGCCCACGCGTCCGCGTGCGCTTGTGTGCCCGTGTGTGTGCGTGTGTGGTGCGTCTACGCGTCCGTGTGTACTTTGCAGAGGCAATCCATCATTACTTAAGCGCTCCCTACGCGTACTTCGTACCGTACCTCCGATCCAAGTATGCGAAAGCCAAGAAGCAACCTGTCGACAATGGCTGGGCTGGGCGTCGTCTTGCTGGTAGGCATCATCGGCGGTCTAGTCGGCCCTGCCCGTGCCCAGCGAACGCCAACCATCTCCTACATCACGCAGGAGCAGATCAAGGACATTGGCGGTACGGTCGAGCTGGAATGTTCGGTCCTGTACGCCAGCGACTACTCCGTCCACTGGGTGAAGACCAGCAACGATCGGTCGGACACGGTCTTCCTGTCCACGGGCAGTTCGCTCGTGCTGAAGGATTCACGCTTCTCGCTCCGCTACGACCTGTCCTCCACGTCGTACACGCTGCAGATTAAGGACATACAGGAGACGGACGCCGGCATCTACCAGTGTCAGGTGGTACTGTCCGTTACAAACAAGATCTCCGCCGAGGTGGCACTGAA]

[+] EMBL BM638338             [CCGCCCACGCGTCCGCGTGCGCTTGTGTGCCCGTGTGTGTGCGTGTGTGGTGCGTCTACGCGTCCGTGTGTACTTTGCAGAGGCAATCCATCATTACTTAAGCGCTCCCTACGCGTACTTCGTACCGTACCTCCGATCCAAGTATGCGAAAGCCAAGAAGCAACCTGTCGACAATGGCTGGGCTGGGCGTCGTCTTGCTGGTAGGCATCATCGGCGGTCTAGTCGGCCCTGCCCGTGCCCAGCGAACGCCAACCATCTCCTACATCACGCAGGAGCAGATCAAGGACATTGGCGGTACGGTCGAGCTGGAATGTTCGGTCCTGTACGCCAGCGACTACTCCGTCCACTGGGTGAAGACCAGCAACGATCGGTCGGACACGGTCTTCCTGTCCACGGGCAGTTCGCTCGTGCTGAAGGATTCACGCTTCTCGCTCCGCTACGACCTGTCCTCCACGTCGTACACGCTGCAGATTAAGGACATACAGGAGACGGACGCCGGCATCTACCAGTGTCAGGTGGTACTGTCCGTTACAAACAAGATCTCCGCCGAGGTGGCACTGAA]




>consensus_1371#1
CCGCCCACGCGTCCGCGTGCGCTTGTGTGCCCGTGTGTGTGCGTGTGTGGTGCGTCTACG
CGTCCGTGTGTACTTTGCAGAGGCAATCCATCATTACTTAAGCGCTCCCTACGCGTACTT
CGTACCGTACCTCCGATCCAAGTATGCGAAAGCCAAGAAGCAACCTGTCGACAATGGCTG
GGCTGGGCGTCGTCTTGCTGGTAGGCATCATCGGCGGTCTAGTCGGCCCTGCCCGTGCCC
AGCGAACGCCAACCATCTCCTACATCACGCAGGAGCAGATCAAGGACATTGGCGGTACGG
TCGAGCTGGAATGTTCGGTCCTGTACGCCAGCGACTACTCCGTCCACTGGGTGAAGACCA
GCAACGATCGGTCGGACACGGTCTTCCTGTCCACGGGCAGTTCGCTCGTGCTGAAGGATT
CACGCTTCTCGCTCCGCTACGACCTGTCCTCCACGTCGTACACGCTGCAGATTAAGGACA
TACAGGAGACGGACGCCGGCATCTACCAGTGTCAGGTGGTACTGTCCGTTACAAACAAGA
TCTCCGCCGAGGTGGCACTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1371#0      CCGGTGTAAGCACGCTCGAGAACTCGTTGCGTCCGTCTTGTCTTCGGTTCGGTTTGGGGT 60
consensus_1371#1      ------------------------------------------------------------
                                                                                  

consensus_1371#0      GTGGTGCGCGTTCAAAGGTTTAACCTGTTTTTTTTTCTTCTCTCCTGTGGATTCGAAAGC 120
consensus_1371#1      ------------------------------------------------------------
                                                                                  

consensus_1371#0      TTTCACACAACGCGTTGGATTTTGCAGTTCAATTTGTCGTCCCGTGCGTGTGCCCGTGAA 180
consensus_1371#1      ------------------------------------------------------------
                                                                                  

consensus_1371#0      TTGTGCAATCAATTAAAGAGCGTGTGTGTTAAATTTTACCACTGAAAGAACCTCTCCCCG 240
consensus_1371#1      ------------------------------------------------------------
                                                                                  

consensus_1371#0      GGTGACGTGTTCAATATATTCGTGCTCCCTGCTTTCCTCGATCGTTCGCCGTTGCGTGCG 300
consensus_1371#1      ------------------------------------------------------------
                                                                                  

consensus_1371#0      TCTCTCCCCTCCCGCAGGTACGATCATCTTCTCCTCGGTGCCCCCATTTCGTGTGTACGT 360
consensus_1371#1      ------------------------------------------CCGCCCACGCGTCCGCGT 18
                                                                **     ** **   ***

consensus_1371#0      GCGCTTGTGGGCCCGTGTGTGTGCGTGTGTGGTGCGTCTACGCGTCCGTGTGTACTTTGC 420
consensus_1371#1      GCGCTTGTGTGCCCGTGTGTGTGCGTGTGTGGTGCGTCTACGCGTCCGTGTGTACTTTGC 78
                      ********* **************************************************

consensus_1371#0      AGAGGCAATCCATCATTACTTAAGCGCTCCCCACGCGTACTTCGTACCGTACCTCCGATC 480
consensus_1371#1      AGAGGCAATCCATCATTACTTAAGCGCTCCCTACGCGTACTTCGTACCGTACCTCCGATC 138
                      ******************************* ****************************

consensus_1371#0      CAAGTATGCGAAAGCCAAGAAGCAACCTGTCGACAATGGCTGGGCTGGGCGTCGTCTTGC 540
consensus_1371#1      CAAGTATGCGAAAGCCAAGAAGCAACCTGTCGACAATGGCTGGGCTGGGCGTCGTCTTGC 198
                      ************************************************************

consensus_1371#0      TGGTAGGCATCATCGGCGGTCTAGTCGGCCCTGCCCGTGCCCAGCGAACGCCAACCATCT 600
consensus_1371#1      TGGTAGGCATCATCGGCGGTCTAGTCGGCCCTGCCCGTGCCCAGCGAACGCCAACCATCT 258
                      ************************************************************

consensus_1371#0      CTTACATCACGCAGGAGCAGATCAAGGACATTGGCGGTACGGTCGAGCTGGGAATGTTCG 660
consensus_1371#1      CCTACATCACGCAGGAGCAGATCAAGGACATTGGCGGTACGGTCGAGCTGG-AATGTTCG 317
                      * ************************************************* ********

consensus_1371#0      GTCCTGTACGCCAGCGACTACTCCGTCCACTGGGTGGAAGACCAGCAACGAC-------- 712
consensus_1371#1      GTCCTGTACGCCAGCGACTACTCCGTCCACTGGGTG-AAGACCAGCAACGATCGGTCGGA 376
                      ************************************ **************         

consensus_1371#0      ------------------------------------------------------------
consensus_1371#1      CACGGTCTTCCTGTCCACGGGCAGTTCGCTCGTGCTGAAGGATTCACGCTTCTCGCTCCG 436
                                                                                  

consensus_1371#0      ------------------------------------------------------------
consensus_1371#1      CTACGACCTGTCCTCCACGTCGTACACGCTGCAGATTAAGGACATACAGGAGACGGACGC 496
                                                                                  

consensus_1371#0      ------------------------------------------------------------
consensus_1371#1      CGGCATCTACCAGTGTCAGGTGGTACTGTCCGTTACAAACAAGATCTCCGCCGAGGTGGC 556
                                                                                  

consensus_1371#0      ------
consensus_1371#1      ACTGAA 562