These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 867 fasta sequence [ATCGGCACGAGGGCAGCAGTCTTGATAGGTGCAGCCACAGGTATTCAGTTTTTGGTATTTGTGACACAGTTGGTATAGGAGCTGAGGTAGTATTGGTGCCTGTTATAATAGGTGGTAGTGAAGGTCGATCGATCCGGTGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGCAAAGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCATTAGGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGATGCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGGCAATACTAGGATCGCCGGGAACTGCACTTATGGACTAAGCAAAAACTAGAATCACGTTAAACGAAAACCGATTAAACGGGTAAAATCGTGGATAAATTCGGAGCAGTTATGCAGTAAACACACTAAGTTTGGCAGTNCTCACACTTACTTACGACAAACTTAATTTACGACAAAACTTTTGCGCTCAGAAGGTCAAGCTAGAGGCACGTTCTTGACTGTGGCCATTTTCAAGTGATAATTCCTGAAAAACTCTCCNTG] [+] EMBL BX467464 [ATCGGCACGAGGGCAGCAGTCTTGATAGGTGCAGCCACAGGTATTCAGTTTTTGGTATTTGTGACACAGTTGGTATAGGAGCTGAGGTAGTATTGGTGCCTGTTATAATAGGTGGTAGTGAAGGTCGATCGATCCGGTGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGCAAAGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCATTAGGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGATGCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGGCAATACTAGGATCGCCGGGAACTGCACTTATGGACTAAGCAAAAACTAGAATCACGTTAAACGAAAACCGATTAAACGGGTAAAATCGTGGATAAATTCGGAGCAGTTATGCAGTAAACACACTAAGTTTGGCAGTNCTCACACTTACTTACGACAAACTTAATTTACGACAAAACTTTTGCGCTCAGAAGGTCAAGCTAGAGGCACGTTCTTGACTGTGGCCATTTTCAAGTGATAATTCCTGAAAAACTCTCCNTG] consensusID : consensus_1384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGAAAAGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCATTAGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGGTAAGTACCCTCACAATATAGGCAGGTAATTGAGCCTTCAACCGGGCCCAGTGCATCAGAACATGCATGACACACGTCCTCTATTTTAGATGCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGCAATACTAGGATCGCGGGAACTGCACCGG] [-] EMBL BM648048 [TGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGAAAAGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCATTAGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGGTAAGTACCCTCACAATATAGGCAGGTAATTGAGCCTTCAACCGGGCCCAGTGCATCAGAACATGCATGACACACGTCCTCTATTTTAGATGCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGCAATACTAGGATCGCGGGAACTGCACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1384#0 ATCGGCACGAGGGCAGCAGTCTTGATAGGTGCAGCCACAGGTATTCAGTTTTTGGTATTT 60 consensus_1384#1 ------------------------------------------------------------ consensus_1384#0 GTGACACAGTTGGTATAGGAGCTGAGGTAGTATTGGTGCCTGTTATAATAGGTGGTAGTG 120 consensus_1384#1 ------------------------------------------------------------ consensus_1384#0 AAGGTCGATCGATCCGGTGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGT 180 consensus_1384#1 -----------------TGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGT 43 ******************************************* consensus_1384#0 ATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATC 240 consensus_1384#1 ATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATC 103 ************************************************************ consensus_1384#0 CGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGCAA 300 consensus_1384#1 CGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGAAA 163 ********************************************************* ** consensus_1384#0 AGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGG 360 consensus_1384#1 AGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGG 223 ************************************************************ consensus_1384#0 CAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTC 420 consensus_1384#1 CAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTC 283 ************************************************************ consensus_1384#0 GCGGATTATCAATCGCATTAGGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTT 480 consensus_1384#1 GCGGATTATCAATCGCATTAG-TACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTT 342 ********************* ************************************** consensus_1384#0 TTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGATGCAAGCTGCGG 540 consensus_1384#1 TTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATG--GTAAGTACCCT 400 *********************************************** * *** * consensus_1384#0 ATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGT 600 consensus_1384#1 CACAATATAGGCAGG----TAATT-GAGCCTTCAACCGGGCCCAGTGCATCAGAACATGC 455 ** * * * *** ** * ** * ** ** * consensus_1384#0 CAGGAAAGGCAATACTAGGATCGCCGGGAACTGCACTTATGGACTAAGCAAAAACTAGAA 660 consensus_1384#1 ATGACACACGTCCTCTATTTTAGATGCAAGCTGCGG--ATGAACGTCGAAGGAGCCACGA 513 * * *** * * * * **** *** ** * * * * * * consensus_1384#0 TCACGTTAAACGAAAACCGATTAAACGGGTAAAATCGTGGATAAATTCGGAGCAGTTATG 720 consensus_1384#1 TTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGCAATACTAGGATCG 573 * * ** * ** * * ** * ***** *** * ** * consensus_1384#0 CAGTAAACACACTAAGTTTGGCAGTNCTCACACTTACTTACGACAAACTTAATTTACGAC 780 consensus_1384#1 CGGGAACTGCACCGG--------------------------------------------- 588 * * ** *** consensus_1384#0 AAAACTTTTGCGCTCAGAAGGTCAAGCTAGAGGCACGTTCTTGACTGTGGCCATTTTCAA 840 consensus_1384#1 ------------------------------------------------------------ consensus_1384#0 GTGATAATTCCTGAAAAACTCTCCNTG 867 consensus_1384#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||