These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCGCGACTCTAGTCGGCTCCAACAACATTTCGCTCAACAAGAAGGGTCGGAAGTCGTCCTCTGTTAGTGCTGTACAGCAGCAGCAGCAGCAGCAGCAACATCACCACCTCCTCCAACAGTCACATGCAGGCCATGGACATGGAACATTGCCCCCCGCCAGTAGCCCGAAAGCGGCGAAAAAAGCAATCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGAATCCGTACCAACAGCACCACGCGGCGGTATCATTCGTCGGAAGCCCGATTGCCAGTCCCAGTCCGATCGCAAGTCCGAACGGCAGCTCGATACTGGTCACTACCGGCAGCGGCACCGGCGTGGCAGCTGGAACGTCCAGCGCGACAAACATGAGGCCACCGACACCGCAACCTATCATTCAGCAGTATCCTGTTGTGGGCACCGGAAATCAAATAGTGCAAATTTTCCAAGGTTCCCAGTTTGCAATTACCCAGTCACAGGCGGCACAGCAGCACCATCATCAGCTGCAGCAGCAGAGCGGGCGCCACACCACAACAATCGTATCCCAGCCCAGCCCCCAGCAACAGCAGCAGCAGCAACAACTAAACCAAACGAGCGTTCAGCAGCAACACATACCGCTGCAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTTGTGCAGCAGCAAATCAT] [+] EMBL BM645096 [CCGCGACTCTAGTCGGCTCCAACAACATTTCGCTCAACAAGAAGGGTCGGAAGTCGTCCTCTGTTAGTGCTGTACAGCAGCAGCAGCAGCAGCAGCAACATCACCACCTCCTCCAACAGTCACATGCAGGCCATGGACATGGAACATTGCCCCCCGCCAGTAGCCCGAAAGCGGCGAAAAAAGCAATCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGAATCCGTACCAACAGCACCACGCGGCGGTATCATTCGTCGGAAGCCCGATTGCCAGTCCCAGTCCGATCGCAAGTCCGAACGGCAGCTCGATACTGGTCACTACCGGCAGCGGCACCGGCGTGGCAGCTGGAACGTCCAGCGCGACAAACATGAGGCCACCGACACCGCAACCTATCATTCAGCAGTATCCTGTTGTGGGCACCGGAAATCAAATAGTGCAAATTTTCCAAGGTTCCCAGTTTGCAATTACCCAGTCACAGGCGGCACAGCAGCACCATCATCAGCTGCAGCAGCAGAGCGGGCGCCACACCACAACAATCGTATCCCAGCCCAGCCCCCAGCAACAGCAGCAGCAGCAACAACTAAACCAAACGAGCGTTCAGCAGCAACACATACCGCTGCAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTTGTGCAGCAGCAAATCAT] consensusID : consensus_1393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [AATCCGAACAACTTCGTTACCAACAGTCTTCAACAGCAGCAACAAATACAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAATTACAGCAACAGCAACAGCAAACTATACAACCATTAGTTGCTCAAGTGCATCCTCAGCAACATCAGTCAGCGAAATTGGCTGGATCTACGACCATGGTCGTAAAAGGTACTATCGGTTCCACCACCGTTACGGCCACAGCACCGGCAGCCCCAGCCAGTAACAACATTACCGTCACGGCAACACCCATCAAGAAGGCCAGAGCCAACATCGTTACACAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTCGTGCAGCAGCAAATCATAGCCACTTCCGTGGCGCCGAGC] [+] EMBL AGA285628 [AATCCGAACAACTTCGTTACCAACAGTCTTCAACAGCAGCAACAAATACAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAATTACAGCAACAGCAACAGCAAACTATACAACCATTAGTTGCTCAAGTGCATCCTCAGCAACATCAGTCAGCGAAATTGGCTGGATCTACGACCATGGTCGTAAAAGGTACTATCGGTTCCACCACCGTTACGGCCACAGCACCGGCAGCCCCAGCCAGTAACAACATTACCGTCACGGCAACACCCATCAAGAAGGCCAGAGCCAACATCGTTACACAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTCGTGCAGCAGCAAATCATAGCCACTTCCGTGGCGCCGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1393#0 CCGCGACTCTAGTCGGCTCCAACAACATTTCGCTCAACAAGAAGGGTCGGAAGTCGTCCT 60 consensus_1393#1 ------------------------------------------------------------ consensus_1393#0 CTGTTAGTGCTGTACAGCAGCAGCAGCAGCAGCAGCAACATCACCACCTCCTCCAACAGT 120 consensus_1393#1 ------------------------------------------------------------ consensus_1393#0 CACATGCAGGCCATGGACATGGAACATTGCCCCCCGCCAGTAGCCCGAAAGCGGCGAAAA 180 consensus_1393#1 ------------------------------------------------------------ consensus_1393#0 AAGCAATCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGAATCCGTACCAACAGCACC 240 consensus_1393#1 ------------------------------------------------------------ consensus_1393#0 ACGCGGCGGTATCATTCGTCGGAAGCCCGATTGCCAGTCCCAGTCCGATCGCAAGTCCGA 300 consensus_1393#1 -----------------------AATCCGA---ACAACTTCGTTACCA--ACAGTCTTCA 32 * **** ** * * * * ** * consensus_1393#0 ACGGCAGCTCGATACTGGTCACTACCGGCAGCGGCACCGGC-GTGGCAGCTGGAACGTCC 359 consensus_1393#1 ACAGCAGCAACAAATACAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCA 92 ** ***** * * ** * * **** *** * ** * **** * *** * consensus_1393#0 AGCGCGACAAACATGA-GGCCACCGACACCGCAACCTATCATTCAGCAGTATCCTGTTGT 418 consensus_1393#1 ATTACAGCAACAGCAACAGCAAACTATACAACCATTAGTTGCTCAAGTGCATCCTC---- 148 * * *** * ** * * * ** * * * *** * ***** consensus_1393#0 GGGCACCGGAAATCAAATAGTGCAAATTTTCCAAGGTTCCCAGTTTGCAATTACCCAGTC 478 consensus_1393#1 -AGCAAC----ATCAGTCAGCG-AAATTGGCTGGA--------TCTACGACCA--TGGTC 192 *** * **** ** * ***** * * * * * * *** consensus_1393#0 ACAGGCGGCACAGCAGCACCATCATCAGCTGCAGCAGCAGAGCGGGCGCCACACCACAAC 538 consensus_1393#1 GTAAAAGGTAC-----------TATCGGTTCCACCACCGTTACGG--------CCACAGC 233 * ** ** *** * * ** ** * *** ***** * consensus_1393#0 AATCGTATCCCAGCCCAGCCCCCAGCAACAGCAGCAGCAGCAACAACTAAACCAAACGAG 598 consensus_1393#1 ACCGGCAGCCC----CAG---CCAGTAACAACATTACCGTCA-CGGCAACACCCATCAAG 285 * * * *** *** **** **** ** * * ** * * * *** * * ** consensus_1393#0 CGTTCAGCAGCAACACATACCGCTGCAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCA 658 consensus_1393#1 AAGGCCAGAGCCA-ACATCGTTACACAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCA 344 * *** * **** *********************************** consensus_1393#0 CCAGCAACAGTTTGTGCAGCAGCAAATCAT---------------------- 688 consensus_1393#1 CCAGCAACAGTTCGTGCAGCAGCAAATCATAGCCACTTCCGTGGCGCCGAGC 396 ************ ***************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||