These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 722 fasta sequence [CGCTCACCTGTACACAGTTCCACATTGTAGCAATAGAGGCTATGGTAGTACGTTAGTCAAAGCAATGACACATCTGATAGCACATGACCATAAACAGCATGTGCAAACATTCATTAGCTCAAATAATGAAAAGTCAATCCGAATATTTGAAAAACTTGGATTCCTACCAGTCAACAACATACAATGGTTAGTCATGGATTAAATTGAACTCACAAACATCGACAAAATTGCGTATCTTTCAGATGCAAAACTATATAATTACACTTTACTGCATTATCTACCTACAATACGATACCTATATGCGTATGCCCATATTTAGAACACCACTCATCTTATCAAGGCGAGCTTTACTGTTTTGACATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAAATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCTTTAAGAGGAGAACAAAAGGTCTTCTATTATATTTCATGTCCAACCTCATAGTTCCAACTCAATTATAATTTAGCCAAATATGGGACCTTTCACGATGCTAGCCAGCTTTTTATATGGAGATTGACATTTTGCGGCTGAAATTAGTTGNTGACAACTCCATACNAAACCACACACAAAACTAGCCTACGATTTTCAGCCTAGATTATTTCAGCCTCCAAGTTAGAATCAGATTTGAGTACCAGCTTGAAAAAT] [+] EMBL BX626677 [CGCTCACCTGTACACAGTTCCACATTGTAGCAATAGAGGCTATGGTAGTACGTTAGTCAAAGCAATGACACATCTGATAGCACATGACCATAAACAGCATGTGCAAACATTCATTAGCTCAAATAATGAAAAGTCAATCCGAATATTTGAAAAACTTGGATTCCTACCAGTCAACAACATACAATGGTTAGTCATGGATTAAATTGAACTCACAAACATCGACAAAATTGCGTATCTTTCAGATGCAAAACTATATAATTACACTTTACTGCATTATCTACCTACAATACGATACCTATATGCGTATGCCCATATTTAGAACACCACTCATCTTATCAAGGCGAGCTTTACTGTTTTGACATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAAATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCTTTAAGAGGAGAACAAAAGGTCTTCTATTATATTTCATGTCCAACCTCATAGTTCCAACTCAATTATAATTTAGCCAAATATGGGACCTTTCACGATGCTAGCCAGCTTTTTATATGGAGATTGACATTTTGCGGCTGAAATTAGTTGNTGACAACTCCATACNAAACCACACACAAAACTAGCCTACGATTTTCAGCCTAGATTATTTCAGCCTCCAAGTTAGAATCAGATTTGAGTACCAGCTTGAAAAAT] consensusID : consensus_1413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [CCGAGGCAATATGAAAAGTATCCGAATATTTGGAAAACTTGGATCCTACCAGTCACAACATACAAAGGTTAGTCATGGATTAAATTGAGACTCACACAACATCGNCAAAATTGGGGTATCTTTTCATATGCAGAAACTATATAATTACACTTTACTGGGATTATCTAACTACAATACGANANCCTAATTATGCCGTATGCCCATATTTAGAACACCACTCATCTTATCCAGGCCAGCTTACTGTGTTGANATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAAATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCGAGGATTGTACAAGAGGAGAACTAAAGGTCTACTATTCATATTTCATGTCCAAACTCATAGTTCCAACTCAATAATAATTTTGCCAAATAAGGGACCTTTCACGATGCTAGCCAGCTTTTTTATATGGAGATTGACATTTTGCCCGCTGAAAATCNGCTGTTGACAACTCC] [+] EMBL AL931759 [CCGAGGCAATATGAAAAGTATCCGAATATTTGGAAAACTTGGATCCTACCAGTCACAACATACAAAGGTTAGTCATGGATTAAATTGAGACTCACACAACATCGNCAAAATTGGGGTATCTTTTCATATGCAGAAACTATATAATTACACTTTACTGGGATTATCTAACTACAATACGANANCCTAATTATGCCGTATGCCCATATTTAGAACACCACTCATCTTATCCAGGCCAGCTTACTGTGTTGANATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAAATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCGAGGATTGTACAAGAGGAGAACTAAAGGTCTACTATTCATATTTCATGTCCAAACTCATAGTTCCAACTCAATAATAATTTTGCCAAATAAGGGACCTTTCACGATGCTAGCCAGCTTTTTTATATGGAGATTGACATTTTGCCCGCTGAAAATCNGCTGTTGACAACTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1413#0 CGCTCACCTGTACACAGTTCCACATTGTAGCAATAGAGGCTATGGTAGTACGTTAGTCAA 60 consensus_1413#1 ------------------------------------------------------------ consensus_1413#0 AGCAATGACACATCTGATAGCACATGACCATAAACAGCATGTGCAAACATTCATTAGCTC 120 consensus_1413#1 ---------------------------------------------------------CCG 3 * consensus_1413#0 AAATAATGAAAAGTCAATCCGAATATTTGAAAAACTTGGATTCCTACCAGTCAACAACAT 180 consensus_1413#1 AGGCAATATGAAAAGTATCCGAATATTTGGAAAACTTGGAT-CCTACCAGTCA-CAACAT 61 * *** ** ************* *********** *********** ****** consensus_1413#0 ACAATGGTTAGTCATGGATTAAATTGA-ACTCACA-AACATCGACAAAATTGCG-TATCT 237 consensus_1413#1 ACAAAGGTTAGTCATGGATTAAATTGAGACTCACACAACATCGNCAAAATTGGGGTATCT 121 **** ********************** ******* ******* ******** * ***** consensus_1413#0 TT-CAGATGCA-AAACTATATAATTACACTTTACTGC-ATTATCTACCTACAATACGATA 294 consensus_1413#1 TTTCATATGCAGAAACTATATAATTACACTTTACTGGGATTATCTAACTACAATACGANA 181 ** ** ***** ************************ ******** *********** * consensus_1413#0 CCTA---TATGC-GTATGCCCATATTTAGAACACCACTCATCTTATCAAGGCGAGCTTTA 350 consensus_1413#1 NCCTAATTATGCCGTATGCCCATATTTAGAACACCACTCATCTTATCCAGGCCAGCTT-A 240 * ***** ********************************** **** ***** * consensus_1413#0 CTGTTTTGACATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAA 410 consensus_1413#1 CTGTGTTGANATCAACTTAAGCTAATTTACATTTCACATGTGAATTCAATACAAAATAAA 300 **** **** ************************************************** consensus_1413#0 ATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGC- 469 consensus_1413#1 ATCAAGTGCTATCAACATACTCTAATATCAAGAAAAACGAGGATTGTACAGACACTGGCG 360 *********************************************************** consensus_1413#0 -------TTTAAGAGGAGAACAAAAGGTCTTCTATT-ATATTTCATGTCCAACCTCATAG 521 consensus_1413#1 AGGATTGTACAAGAGGAGAACTAAAGGTCTACTATTCATATTTCATGTCCAAACTCATAG 420 * *********** ******** ***** *************** ******* consensus_1413#0 TTCCAACTCAATTATAATTTAGCCAAATATGGGACCTTTCACGATGCTAGCCAGCTTTTT 581 consensus_1413#1 TTCCAACTCAATAATAATTTTGCCAAATAAGGGACCTTTCACGATGCTAGCCAGCTTTTT 480 ************ ******* ******** ****************************** consensus_1413#0 -ATATGGAGATTGACATTTTGCG-GCTGAAA-TTAGTTGNTGACAACTCCATACNAAACC 638 consensus_1413#1 TATATGGAGATTGACATTTTGCCCGCTGAAAATCNGCTGTTGACAACTCC---------- 530 ********************* ******* * * ** ********** consensus_1413#0 ACACACAAAACTAGCCTACGATTTTCAGCCTAGATTATTTCAGCCTCCAAGTTAGAATCA 698 consensus_1413#1 ------------------------------------------------------------ consensus_1413#0 GATTTGAGTACCAGCTTGAAAAAT 722 consensus_1413#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||