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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[GCAGAATCGCCCCGAGGTTATGGAACAGCATCGCCCGGCAAAATGGTTGATGCAAAAGAAGCTTGACGTACAGGACAGAGATCGAATTGGGACACACTCACCGCGATCAGGTACATCTTCGAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAAACCAGCTACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGTTGTAAATAAACCACCTGTTATAAATCCTGGATATNCACCATATCTTGCCGGTCCGTGAATGGTGCTCCACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGGTCCGGGTGTGCACAATAACCTTCCACATTCACTAAACAAATACGACCCGCGCTCCGCTGGCGTTGATCCTCATTTCTCAGATGCGTGTCCTCTGGGTCCGATTGGAATTCGGGTGGAACAACTGNCATATNCTTTTCAGTGTTGAACCGCATGAAANTGGGCCAAAATGGCNAACANCCCGGGCGGCCCATTNGNCNCCTNCAAAGAATTGGCCCATTAAAGATAGGAACCCAAGCGACCATTTCCCACAGGTCAACGGCCTGAGGACACCAGGAGTTCAGAAGCTCCTGCAAAGCCCACTGGGGAGGAAAAGACAGGAAGATGGTGCCAGTCAAACACGAGATACTCCCAAAACCNGAACACAAAATAACCGCTAAACACGNNGGTTGG]
[+] EMBL AL933740 [GCAGAATCGCCCCGAGGTTATGGAACAGCATCGCCCGGCAAAATGGTTGATGCAAAAGAAGCTTGACGTACAGGACAGAGATCGAATTGGGACACACTCACCGCGATCAGGTACATCTTCGAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAAACCAGCTACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGTTGTAAATAAACCACCTGTTATAAATCCTGGATATNCACCATATCTTGCCGGTCCGTGAATGGTGCTCCACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGGTCCGGGTGTGCACAATAACCTTCCACATTCACTAAACAAATACGACCCGCGCTCCGCTGGCGTTGATCCTCATTTCTCAGATGCGTGTCCTCTGGGTCCGATTGGAATTCGGGTGGAACAACTGNCATATNCTTTTCAGTGTTGAACCGCATGAAANTGGGCCAAAATGGCNAACANCCCGGGCGGCCCATTNGNCNCCTNCAAAGAATTGGCCCATTAAAGATAGGAACCCAAGCGACCATTTCCCACAGGTCAACGGCCTGAGGACACCAGGAGTTCAGAAGCTCCTGCAAAGCCCACTGGGGAGGAAAAGACAGGAAGATGGTGCCAGTCAAACACGAGATACTCCCAAAACCNGAACACAAAATAACCGCTAAACACGNNGGTTGG]
consensusID : consensus_1421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[CCGGGACCCCGTAGCAAGGACTGACTATCCGGCTGTGTGGTACTGAACAAAGTCTCGAAAGCCTTATAAGTCGGCATGTCCCTTATAGGCCGGCATGGCAGGACGTTTACGCCAAATAGAAGAAAAACTGTCCTTGCGTATGCTGGAATGATTATACTGCTAGAGATAAAATTAGTCGTAGATAATCATTGTATTGGATCGTTACAAATAAAAAAGCTTACATGTGGTCATGTGCAAGATAGTAGATACGTGTAGTTCACCTTAAACACGATAATGTCAGTTTAGCTTTGTGTTTCATGAGACATATTTTTTAACTTACAATTTATTCTTTTAACATAATAGGTACATCTTCGAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAAACCAGCTACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGTTGTAAATAAACCACCTGTTATAAATCCTGGATATCCACCATATCTTGCCGGTCCGTTGAATGGTATGATATATAGTTTGAATGATCTTTATCGTGGTATATAATAATTTATGTCTCGTTTTTGTTTCAGGTGCTCCACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGG]
[+] EMBL BM583537 [CCGGGACCCCGTAGCAAGGACTGACTATCCGGCTGTGTGGTACTGAACAAAGTCTCGAAAGCCTTATAAGTCGGCATGTCCCTTATAGGCCGGCATGGCAGGACGTTTACGCCAAATAGAAGAAAAACTGTCCTTGCGTATGCTGGAATGATTATACTGCTAGAGATAAAATTAGTCGTAGATAATCATTGTATTGGATCGTTACAAATAAAAAAGCTTACATGTGGTCATGTGCAAGATAGTAGATACGTGTAGTTCACCTTAAACACGATAATGTCAGTTTAGCTTTGTGTTTCATGAGACATATTTTTTAACTTACAATTTATTCTTTTAACATAATAGGTACATCTTCGAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAAACCAGCTACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGTTGTAAATAAACCACCTGTTATAAATCCTGGATATCCACCATATCTTGCCGGTCCGTTGAATGGTATGATATATAGTTTGAATGATCTTTATCGTGGTATATAATAATTTATGTCTCGTTTTTGTTTCAGGTGCTCCACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1421#0 GCAGAATCGCCCCGAGGTTATGGAACAGCATCGCCCGGCAAAATGGTTGATGCAAAAGAA 60
consensus_1421#1 ------------------------------------------------------CCGGGA 6
* *
consensus_1421#0 GCTTGACGTACAGGACAGAGATCGAATTGGGACACACTCACCGCGATCAGGTACATCTTC 120
consensus_1421#1 CCCCGTAGCAAGGACTGACTATCCGGCTGTGTGGTACTGAACAAAGTCTCGAAAGCCTT- 65
* * * * * *** ** * *** * * ** * * ***
consensus_1421#0 GAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAA 180
consensus_1421#1 --ATAAGTCGGCATGTCCCT-TATAGGCCGGCATGGCAGGACGTTTACGCCAAATAGAAG 122
** ** * * * * * *** ** * ** ** * * **
consensus_1421#0 ACCAGCTACCCCTACCAACTCGGTAGCAA--GCAACGGTGTTCCAAAGGTTGTAAATAAA 238
consensus_1421#1 AAAAACTGTCCTTGCGTATGCTGGAATGATTATACTGCTAGAGATAAAATTAGTCGTAGA 182
* * ** ** * * * * * * * * * * ** ** ** *
consensus_1421#0 CCACC--TGTTATAAATCCTGGATATNCACCATATCTTGCCGGTCCGTGAATGGTGCTCC 296
consensus_1421#1 TAATCATTGTATTGGATCGTT-ACAAATAAAAAAGCTTAC--ATGTGGTCATG-TGCAAG 238
* * *** * *** * * * * * * *** * * * *** ***
consensus_1421#0 ACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGGTCCGGGTGTGCACAATAA 356
consensus_1421#1 ATAGTAGATACGTGTAGTTCACCTTAAACACGATAATGTCAGTTTAGCTTTGTGTT-TCA 297
* * * * * * ** * * * * * *** * ** * * ** * *
consensus_1421#0 CCTTCCACATTCACTAAACAAATACGACCCGCGCTCCGCTGGCGTTGATCCTCATTTCTC 416
consensus_1421#1 TGAGACATATTTTTTAACT---TACAATTTAT--TCTTTTAACATAATAGGTACATCTTC 352
** *** *** *** * ** * * * * * **
consensus_1421#0 AGATGCGTGTCCTCTGGGTCCGATTGGAATTCGGGTGGAACAACTGNCATATNCTTTTCA 476
consensus_1421#1 GAATGCATCAACGCCT--TCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCA 410
**** * * * ** * ** * * ** * * * ** * ** **
consensus_1421#0 GTGTTGAACCGCATGAAANTGGGCCAAAATGGCNAACANCCCGGGCGGCCCATTNGNCNC 536
consensus_1421#1 A-----AACCAGCT--ACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGT--- 460
**** * * **** ** * * ** * *** *
consensus_1421#0 CTNCAAAGAATTGGCCCATTAAAGATAGGAACCCAAGCGACCATTTCCCACAGGTCAACG 596
consensus_1421#1 -TGTAAATAAACCACCTGTTATAAATCCTGGAT--ATCCACCATATCTTGCCGGTCCGTT 517
* *** ** ** *** * ** * * ***** ** * ****
consensus_1421#0 GCCTGAGGACACCAGGAGTTCAGAAGCTCCTGCAAAGCCCACTGGGGAGGAAAAGACAGG 656
consensus_1421#1 GAATGGTATGATATATAGTTTGAATGATCTTTATCGTGGTATATAATAATTTATGTCTCG 577
* ** * **** * * ** * * * * * * *
consensus_1421#0 AAGATGGTGCCAGTCAAACACGAGATACTCCCAAAACCNGAACACAAAATAACCGCTAAA 716
consensus_1421#1 TTTTTGTTTCAGGTGCTCCACACGATCTTCAAGCAGCTGCCGCT-------GCCGCTGCT 630
** * * ** *** *** ** * * * *****
consensus_1421#0 CACGNNGGTTGG 728
consensus_1421#1 TATGGCGG---- 638
* * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||