These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence [GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCACTGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTTCATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGGGTACTCGCGCGGCAAGCCGATTAGACAACCAACCGGTGGCCCTGNTAGCNGCATTACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCACAGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACGGGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCTCACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTGGNCCGGGCTCGCATTCGGACCCCA] [+] EMBL AL692446 [GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCACTGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTTCATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGGGTACTCGCGCGGCAAGCCGATTAGACAACCAACCGGTGGCCCTGNTAGCNGCATTACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCACAGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACGGGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCTCACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTGGNCCGGGCTCGCATTCGGACCCCA] consensusID : consensus_145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CCGGCAACACGCATCCAGTCCCGTGTTGTGTGCGTCGTTGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAATTGCAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGTCGTTGAAGCTGGTACCCCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAGTGCAGAAAACCTGAAACGAAAAGGGAAAGTGATCGCACAGAAACCGGGAGTGATCCCGTGGTCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGAAAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTGGTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTAATTCTGGTTGTGACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTTTTATTTGTGACCATATTCTTATCGTGTCTGCTCGTTATGTTTTCCAGTTGAATAAGATACACCAGCAAAACCACTCAAATAAACACACACTCTCCAAAATGAACCCCGGTGGTA] [+] EMBL BM632426 [CCGGCAACACGCATCCAGTCCCGTGTTGTGTGCGTCGTTGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAATTGCAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGTCGTTGAAGCTGGTACCCCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAGTGCAGAAAACCTGAAACGAAAAGGGAAAGTGATCGCACAGAAACCGGGAGTGATCCCGTGGTCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGAAAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTGGTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTAATTCTGGTTGTGACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTTTTATTTGTGACCATATTCTTATCGTGTCTGCTCGTTATGTTTTCCAGTTGAATAAGATACACCAGCAAAACCACTCAAATAAACACACACTCTCCAAAATGAACCCCGGTGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_145#0 GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCAC 60 consensus_145#1 -----------------CCGGCAACACGCATCCA-----GTCCCGTGTTGTGTGCGTCGT 38 * ** ** * * ** * * **** * consensus_145#0 TGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTT 120 consensus_145#1 TGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAAT-TG 97 ***** * * * *** * ** ** * * *** ** * consensus_145#0 CATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAAC 180 consensus_145#1 CAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGT--------CGTTGAAGCTGGT 149 ** * *** ** * ** **** * *** * * * consensus_145#0 ACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTC 240 consensus_145#1 ACC---CCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAG 206 *** * * * * * **** * ** *** * * * ** consensus_145#0 TTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACC 300 consensus_145#1 TGCAGAAAACCTGAAACGAAAAGG--GAAAGTGATCG--CACAGAAACCGGGAGTGATCC 262 * ** * * * * ** ****** * * ** * ** ** consensus_145#0 TTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGG---GATCG--CTGTTCGGCTGTG 355 consensus_145#1 CGTGG-TCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGA 321 *** *** * ***** * * ** * * * ***** * * * * consensus_145#0 CCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGG 415 consensus_145#1 AAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTG 381 ** ** * *** * *** * ** * ** *** * consensus_145#0 GTACTCGC-GCGGC---AAGCCGATTAGACAAC-CAACCGGTGGCCCTGNTAGCNGCATT 470 consensus_145#1 GTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTA 441 ** * * * * **** * ** * * *** * * * consensus_145#0 ACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCAC 530 consensus_145#1 ATTCTGGTTGTG------ACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTT 495 * * ** *** ** **** * *** * * * * * consensus_145#0 AGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACG 590 consensus_145#1 TTATTTGTGA-CCATATTC-TTATCGTGTCTGCTCG--TTATGTTTTCC--AGTTGAATA 549 * ** ** ** ** * ** * * * * * *** ** * ***** consensus_145#0 GGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCT 650 consensus_145#1 AGATACACCAGCAAAACC---ACTCAAATAAACAC-ACACTCTCCAAAATGAACCCCGGT 605 * * * **** ** * * **** * ** ** * *** * consensus_145#0 CACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTG 710 consensus_145#1 GGTA-------------------------------------------------------- 609 consensus_145#0 GNCCGGGCTCGCATTCGGACCCCA 734 consensus_145#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||