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Anopheles gambiae
cluster # 1451 cluster # 1451       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1451#0 length = 708 sequences # 1  
consensus_1451#1 length = 629 sequences # 1  

consensusID : consensus_1451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence
                              [CCGCCCACGCGTCCGATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAATGGGGGGAAAAGCCAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATAATAATATGCCCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCATTACTACTACTAAACTCGCTATATCCACCGAACACTTCCATTGGCACTTGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACCGATAGCATGATTGCACGCCCAGAAACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGTGTAGCGTCCCTTGGCTCATCCTTCAATCCGTATCCCTCCCCCTTGGCAGCAGCCAGCACTATTTGTGCAATGGAAATGCCTCCAATAAGATGCGGGGAAAAAGGGACAAGGATACATATTAGTACAGACACCTGTTTAGTGTGTATAGCGTTTAATGCGGCGTTATCCTTTTTCCTCTCGATGTGGTCTGTTCTGGGTATTATTGGAGTACTGGGGCTCCGG]

[+] EMBL BM648430             [CCGCCCACGCGTCCGATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAATGGGGGGAAAAGCCAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATAATAATATGCCCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCATTACTACTACTAAACTCGCTATATCCACCGAACACTTCCATTGGCACTTGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACCGATAGCATGATTGCACGCCCAGAAACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGTGTAGCGTCCCTTGGCTCATCCTTCAATCCGTATCCCTCCCCCTTGGCAGCAGCCAGCACTATTTGTGCAATGGAAATGCCTCCAATAAGATGCGGGGAAAAAGGGACAAGGATACATATTAGTACAGACACCTGTTTAGTGTGTATAGCGTTTAATGCGGCGTTATCCTTTTTCCTCTCGATGTGGTCTGTTCTGGGTATTATTGGAGTACTGGGGCTCCGG]


>consensus_1451#0 CCGCCCACGCGTCCGATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAATG GGGGGAAAAGCCAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATAATAATATGC CCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTT CTACTACTACCATTACTACTACTAAACTCGCTATATCCACCGAACACTTCCATTGGCACT TGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAAC CGATAGCATGATTGCACGCCCAGAAACTGCATTCGCGCATAGAGCTATTTACAAAGAAGG TACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAA AGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAG CAAAGTGTAGCGTCCCTTGGCTCATCCTTCAATCCGTATCCCTCCCCCTTGGCAGCAGCC AGCACTATTTGTGCAATGGAAATGCCTCCAATAAGATGCGGGGAAAAAGGGACAAGGATA CATATTAGTACAGACACCTGTTTAGTGTGTATAGCGTTTAATGCGGCGTTATCCTTTTTC CTCTCGATGTGGTCTGTTCTGGGTATTATTGGAGTACTGGGGCTCCGG



consensusID : consensus_1451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence
                              [AGGGTAAAAGAAGCGAACGGAACACCTTAAATGGAAGCGCGGATGGTTCCTAAAAACGGCTTAAAATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAACGGGGGGAAAAGCGAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATTAATATGCCCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCATTACTGCTACTACTACTACACTCGCTATATCCACCGAACACTTCCACTGGCACTTGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACTGATAGCATGATTGCACGCCCAGACACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGTGTAGCGTCCCTTGTCTCATCCTTCAATCCCCTATCATTGCCCCTTGGCCGCAGCCAGAACTATTTTGTGCAATGGAAATGCCTCCCATA]

[+] EMBL BX627458             [AGGGTAAAAGAAGCGAACGGAACACCTTAAATGGAAGCGCGGATGGTTCCTAAAAACGGCTTAAAATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAACGGGGGGAAAAGCGAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATTAATATGCCCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCATTACTGCTACTACTACTACACTCGCTATATCCACCGAACACTTCCACTGGCACTTGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACTGATAGCATGATTGCACGCCCAGACACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGTGTAGCGTCCCTTGTCTCATCCTTCAATCCCCTATCATTGCCCCTTGGCCGCAGCCAGAACTATTTTGTGCAATGGAAATGCCTCCCATA]


>consensus_1451#1 AGGGTAAAAGAAGCGAACGGAACACCTTAAATGGAAGCGCGGATGGTTCCTAAAAACGGC TTAAAATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAACGGGGGGAAAAG CGAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATTAATATGCCCGGTATTTATA GATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCA TTACTGCTACTACTACTACACTCGCTATATCCACCGAACACTTCCACTGGCACTTGCAGT AGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACTGATAG CATGATTGCACGCCCAGACACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGA AGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTA TATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGT GTAGCGTCCCTTGTCTCATCCTTCAATCCCCTATCATTGCCCCTTGGCCGCAGCCAGAAC TATTTTGTGCAATGGAAATGCCTCCCATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1451#0      -------------------------------------------------CCGCCCACG-C 10
consensus_1451#1      AGGGTAAAAGAAGCGAACGGAACACCTTAAATGGAAGCGCGGATGGTTCCTAAAAACGGC 60
                                                                       *     *** *

consensus_1451#0      GTCCGATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAATGGGGGGAAAAG 70
consensus_1451#1      TTAAAATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAACGGGGGGAAAAG 120
                       *   ******************************************* ***********

consensus_1451#0      CCAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATAATAATATGCCCGGTATTTA 130
consensus_1451#1      CGAACACATTATTAGCCAGTTAATCAAACAGTTCAATAAT--TAATATGCCCGGTATTTA 178
                      * **************************************  ******************

consensus_1451#0      TAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTAC 190
consensus_1451#1      TAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTAC 238
                      ************************************************************

consensus_1451#0      CATTACT------ACTACTAAACTCGCTATATCCACCGAACACTTCCATTGGCACTTGCA 244
consensus_1451#1      CATTACTGCTACTACTACTACACTCGCTATATCCACCGAACACTTCCACTGGCACTTGCA 298
                      *******      ******* *************************** ***********

consensus_1451#0      GTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACCGAT 304
consensus_1451#1      GTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACTGAT 358
                      ******************************************************** ***

consensus_1451#0      AGCATGATTGCACGCCCAGAAACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACA 364
consensus_1451#1      AGCATGATTGCACGCCCAGACACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACA 418
                      ******************** ***************************************

consensus_1451#0      GAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCC 424
consensus_1451#1      GAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCC 478
                      ************************************************************

consensus_1451#0      TATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAA 484
consensus_1451#1      TATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAA 538
                      ************************************************************

consensus_1451#0      GTGTAGCGTCCCTTGGCTCATCCTTCAATCCG-TATCCCTCCCCCTTGGCAGCAGCCAGC 543
consensus_1451#1      GTGTAGCGTCCCTTGTCTCATCCTTCAATCCCCTATCATTGCCCCTTGGCCGCAGCCAGA 598
                      *************** ***************  ****  * ********* ******** 

consensus_1451#0      ACTATTT-GTGCAATGGAAATGCCTCCAATAAGATGCGGGGAAAAAGGGACAAGGATACA 602
consensus_1451#1      ACTATTTTGTGCAATGGAAATGCCTCCCATA----------------------------- 629
                      ******* ******************* ***                             

consensus_1451#0      TATTAGTACAGACACCTGTTTAGTGTGTATAGCGTTTAATGCGGCGTTATCCTTTTTCCT 662
consensus_1451#1      ------------------------------------------------------------
                                                                                  

consensus_1451#0      CTCGATGTGGTCTGTTCTGGGTATTATTGGAGTACTGGGGCTCCGG 708
consensus_1451#1      ----------------------------------------------
                                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)