These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [CCGCCCACGCGTCCGATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAATGGGGGGAAAAGCCAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATAATAATATGCCCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCATTACTACTACTAAACTCGCTATATCCACCGAACACTTCCATTGGCACTTGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACCGATAGCATGATTGCACGCCCAGAAACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGTGTAGCGTCCCTTGGCTCATCCTTCAATCCGTATCCCTCCCCCTTGGCAGCAGCCAGCACTATTTGTGCAATGGAAATGCCTCCAATAAGATGCGGGGAAAAAGGGACAAGGATACATATTAGTACAGACACCTGTTTAGTGTGTATAGCGTTTAATGCGGCGTTATCCTTTTTCCTCTCGATGTGGTCTGTTCTGGGTATTATTGGAGTACTGGGGCTCCGG] [+] EMBL BM648430 [CCGCCCACGCGTCCGATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAATGGGGGGAAAAGCCAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATAATAATATGCCCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCATTACTACTACTAAACTCGCTATATCCACCGAACACTTCCATTGGCACTTGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACCGATAGCATGATTGCACGCCCAGAAACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGTGTAGCGTCCCTTGGCTCATCCTTCAATCCGTATCCCTCCCCCTTGGCAGCAGCCAGCACTATTTGTGCAATGGAAATGCCTCCAATAAGATGCGGGGAAAAAGGGACAAGGATACATATTAGTACAGACACCTGTTTAGTGTGTATAGCGTTTAATGCGGCGTTATCCTTTTTCCTCTCGATGTGGTCTGTTCTGGGTATTATTGGAGTACTGGGGCTCCGG] consensusID : consensus_1451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [AGGGTAAAAGAAGCGAACGGAACACCTTAAATGGAAGCGCGGATGGTTCCTAAAAACGGCTTAAAATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAACGGGGGGAAAAGCGAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATTAATATGCCCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCATTACTGCTACTACTACTACACTCGCTATATCCACCGAACACTTCCACTGGCACTTGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACTGATAGCATGATTGCACGCCCAGACACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGTGTAGCGTCCCTTGTCTCATCCTTCAATCCCCTATCATTGCCCCTTGGCCGCAGCCAGAACTATTTTGTGCAATGGAAATGCCTCCCATA] [+] EMBL BX627458 [AGGGTAAAAGAAGCGAACGGAACACCTTAAATGGAAGCGCGGATGGTTCCTAAAAACGGCTTAAAATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAACGGGGGGAAAAGCGAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATTAATATGCCCGGTATTTATAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTACCATTACTGCTACTACTACTACACTCGCTATATCCACCGAACACTTCCACTGGCACTTGCAGTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACTGATAGCATGATTGCACGCCCAGACACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACAGAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCCTATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAAGTGTAGCGTCCCTTGTCTCATCCTTCAATCCCCTATCATTGCCCCTTGGCCGCAGCCAGAACTATTTTGTGCAATGGAAATGCCTCCCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1451#0 -------------------------------------------------CCGCCCACG-C 10 consensus_1451#1 AGGGTAAAAGAAGCGAACGGAACACCTTAAATGGAAGCGCGGATGGTTCCTAAAAACGGC 60 * *** * consensus_1451#0 GTCCGATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAATGGGGGGAAAAG 70 consensus_1451#1 TTAAAATCTCCAATACAAACTCAAGCGTACACGGGAGGCAGCTTAAAACGGGGGGAAAAG 120 * ******************************************* *********** consensus_1451#0 CCAACACATTATTAGCCAGTTAATCAAACAGTTCAATAATAATAATATGCCCGGTATTTA 130 consensus_1451#1 CGAACACATTATTAGCCAGTTAATCAAACAGTTCAATAAT--TAATATGCCCGGTATTTA 178 * ************************************** ****************** consensus_1451#0 TAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTAC 190 consensus_1451#1 TAGATTACAACCAAACAACCAAGCACCCTTCTTCAACTGCCTGTACGCTTCTACTACTAC 238 ************************************************************ consensus_1451#0 CATTACT------ACTACTAAACTCGCTATATCCACCGAACACTTCCATTGGCACTTGCA 244 consensus_1451#1 CATTACTGCTACTACTACTACACTCGCTATATCCACCGAACACTTCCACTGGCACTTGCA 298 ******* ******* *************************** *********** consensus_1451#0 GTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACCGAT 304 consensus_1451#1 GTAGGGAAGTCATTACCTATACCAAAAAGAAAAGCAAAAGTTAAAGTTTGAGCAACTGAT 358 ******************************************************** *** consensus_1451#0 AGCATGATTGCACGCCCAGAAACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACA 364 consensus_1451#1 AGCATGATTGCACGCCCAGACACTGCATTCGCGCATAGAGCTATTTACAAAGAAGGTACA 418 ******************** *************************************** consensus_1451#0 GAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCC 424 consensus_1451#1 GAAGGACAGAGTAGTAACGGCCGAAGATATTAGACACGCCTCTCCCGAGCAGAAAAAGCC 478 ************************************************************ consensus_1451#0 TATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAA 484 consensus_1451#1 TATATTACAACACGAAAGCCTGTAGATATAGATAGAACTCGATCCAATTATAATAGCAAA 538 ************************************************************ consensus_1451#0 GTGTAGCGTCCCTTGGCTCATCCTTCAATCCG-TATCCCTCCCCCTTGGCAGCAGCCAGC 543 consensus_1451#1 GTGTAGCGTCCCTTGTCTCATCCTTCAATCCCCTATCATTGCCCCTTGGCCGCAGCCAGA 598 *************** *************** **** * ********* ******** consensus_1451#0 ACTATTT-GTGCAATGGAAATGCCTCCAATAAGATGCGGGGAAAAAGGGACAAGGATACA 602 consensus_1451#1 ACTATTTTGTGCAATGGAAATGCCTCCCATA----------------------------- 629 ******* ******************* *** consensus_1451#0 TATTAGTACAGACACCTGTTTAGTGTGTATAGCGTTTAATGCGGCGTTATCCTTTTTCCT 662 consensus_1451#1 ------------------------------------------------------------ consensus_1451#0 CTCGATGTGGTCTGTTCTGGGTATTATTGGAGTACTGGGGCTCCGG 708 consensus_1451#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||