These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGTCGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAAGCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCACCACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAAAGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCATGCAAGACCGTCAGGGACAACGGG] [+] EMBL BM610053 [CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGTCGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAAGCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCACCACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAAAGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCATGCAAGACCGTCAGGGACAACGGG] consensusID : consensus_1457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGCGGAAACGAAAGAAGCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCACCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT] [+] EMBL BM611507 [CCGCGGACGCGTGGGCGGACGCGTGGGGCGGAAACGAAAGAAGCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCACCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1457#0 CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGT 60 consensus_1457#1 ------------------------------------------------------------ consensus_1457#0 CGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAA 120 consensus_1457#1 ---------------CCGCGGACGCGTGGGCGGAC---GCGTGGGGCGGAAACGAAAGAA 42 ** * ** ** * *************** consensus_1457#0 GCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACA 180 consensus_1457#1 GCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACA 102 *************** ******************************************** consensus_1457#0 ACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCAC 240 consensus_1457#1 ACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCAC 162 ************************** ***************** *************** consensus_1457#0 CACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCC 300 consensus_1457#1 CACCATCA------TCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCC 216 ******** ********************************************** consensus_1457#0 GAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCAC 360 consensus_1457#1 GAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCAC 276 ************************************************************ consensus_1457#0 AAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGG 420 consensus_1457#1 AAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGG 336 ****************************************** ***************** consensus_1457#0 GAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATT 480 consensus_1457#1 GAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATT 396 ************************************************************ consensus_1457#0 AACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTC 540 consensus_1457#1 AACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTC 456 ************************************************************ consensus_1457#0 GCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAA 600 consensus_1457#1 GCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT----------------- 499 ******************************************* consensus_1457#0 AGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCAT 660 consensus_1457#1 ------------------------------------------------------------ consensus_1457#0 GCAAGACCGTCAGGGACAACGGG 683 consensus_1457#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||