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Anopheles gambiae
cluster # 1475 cluster # 1475       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1475#0 length = 489 sequences # 1  
consensus_1475#1 length = 486 sequences # 1  

consensusID : consensus_1475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence
                              [CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTTCTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGGCGGCGAGGC]

[+] EMBL BM609812             [CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTTCTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGGCGGCGAGGC]


>consensus_1475#0 CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTT CTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGA CGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTC CGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAG GCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCA CGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCC GGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAA GGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGG CGGCGAGGC



consensusID : consensus_1475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence
                              [CGCCACGAGGTGTAGCGATCAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACGGCGGGGCGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACGGAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG]

[+] EMBL BX469517             [CGCCACGAGGTGTAGCGATCAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACGGCGGGGCGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACGGAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG]


>consensus_1475#1 CGCCACGAGGTGTAGCGATCAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCT GCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGAT CTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCGGCCTGGGCGCTCGA GGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCT GGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCGAAGAA GCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGAACGGCGAGGAGGGCGGCGA GGCGGCCCACGTGAACGGGGACGGCGGGGCGGCAGAGCAGAAGGAGGAACCGGCCGCCGC CGCCGCCGNTACCAATGGCGATAGCGACGGAGAGTGAGAAGAAGGAATCGAGTTGAACGG TTAGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1475#0      CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTT 60
consensus_1475#1      ------------------------------------------------------------
                                                                                  

consensus_1475#0      CTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGA 120
consensus_1475#1      ----------------------------CGCCACGAGGTGTAGC-GATCA-GCTGTTCGA 30
                                                      ** * **** ** ***** *********

consensus_1475#0      CGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTC 180
consensus_1475#1      CGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTC 90
                      ************************************************************

consensus_1475#0      CGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAG 240
consensus_1475#1      CGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAG 150
                      ************************************************************

consensus_1475#0      GCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCA 300
consensus_1475#1      GCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCA 210
                      *************** ********************************************

consensus_1475#0      CGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCC 360
consensus_1475#1      CGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCC 270
                      ************************************************************

consensus_1475#0      GGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAA 420
consensus_1475#1      GGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAA 330
                      ************************ ***********************************

consensus_1475#0      GGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGG 480
consensus_1475#1      GGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACG-GCGGGG 389
                      ********** *** * ** **   * ****   *    **   *** * *   *  ***

consensus_1475#0      CGGCGAGGC--------------------------------------------------- 489
consensus_1475#1      CGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACG 449
                      ****   **                                                   

consensus_1475#0      -------------------------------------
consensus_1475#1      GAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG 486
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)