These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTTCTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGGCGGCGAGGC] [+] EMBL BM609812 [CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTTCTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGGCGGCGAGGC] consensusID : consensus_1475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CGCCACGAGGTGTAGCGATCAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACGGCGGGGCGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACGGAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG] [+] EMBL BX469517 [CGCCACGAGGTGTAGCGATCAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACGGCGGGGCGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACGGAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1475#0 CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTT 60 consensus_1475#1 ------------------------------------------------------------ consensus_1475#0 CTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGA 120 consensus_1475#1 ----------------------------CGCCACGAGGTGTAGC-GATCA-GCTGTTCGA 30 ** * **** ** ***** ********* consensus_1475#0 CGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTC 180 consensus_1475#1 CGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTC 90 ************************************************************ consensus_1475#0 CGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAG 240 consensus_1475#1 CGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAG 150 ************************************************************ consensus_1475#0 GCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCA 300 consensus_1475#1 GCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCA 210 *************** ******************************************** consensus_1475#0 CGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCC 360 consensus_1475#1 CGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCC 270 ************************************************************ consensus_1475#0 GGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAA 420 consensus_1475#1 GGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAA 330 ************************ *********************************** consensus_1475#0 GGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGG 480 consensus_1475#1 GGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACG-GCGGGG 389 ********** *** * ** ** * **** * ** *** * * * *** consensus_1475#0 CGGCGAGGC--------------------------------------------------- 489 consensus_1475#1 CGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACG 449 **** ** consensus_1475#0 ------------------------------------- consensus_1475#1 GAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG 486 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||