These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1148 fasta sequence [GGCAGAATTCCCGAGGTTTGGAGCATGGCGACGAACCCTATNGTTTATTGTTTTCCTGGTCTCCCGGGCCAAAAGGACAGCACAACTAACACACACGGTACCACACATACAGGCATATACCCACTATACGGCCATCACCGCATGCATCACCGGCTATACAAATGCTAACTGTGTAAGCGCTATAAATGGTAGAGCTGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCTGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAANCAATTACCTCTTTTCCANTTGGGCGAACAAAACCCGAAAAACACCAAAGCACCTACACNGCGATTGTTGTACCACGGTAATAACCACTAATTGANCCTGTTGAAATCCATAACTTTCACTAACGCTAAGAATTAGGGCAACCAGTTGCGACCAACATGGGTCCGGGCACGCATTGGGGCACCGACTTATATCCACCGCACNATNAGCCCGCNGCTAACCAACCTTAAATANCTCAGAACAGCNGGNGCGGCAAACATTGGTTCTACCATAATACATCAGGCNTATGGTTCACGCACTTAACCTTAAAGTTTAAGTTAACNCCCAGGCGCGATTCTTAACCGNCGTTTTGCGCACCCNCACTTACCTTCNTTACNACAGGGGGCCANGCNCTTCCTCACATACCCCTTTTTCGCCCCACGCACCAGGTTACAATATGGCACGCACGGGCGCANNAGCNCGCACANCGCCNGANGTTGGGTNTCCCAACAAAGCAACGNAANANCCCNCCCTTACGTTTCTGTACNCANCCCGCCCCCTTTCCGCTANCTTAAGGGCCTTCCANCCCCGGAAAATAAGNAAAAAACGCCCCCGGCCGCGGCACGGCGCATAACCCGACCACCGGCGGCGCGGGCGACCCCATAGGTATNGGGCACGCCGGCTACACACGACCGCACACGGCCTTACACCTTGCTCCGGAGTGGCTTAANNGGGTACCTTNCNGCCCCTCTACACACACCCNTCNTCACATCAAAACNAAACNAAACACCNACCGGGNCTNTACNAGCCAANCTTACNGAGNAANCCTTCCGCCCGGCAGGCACACACATANCCNAAGCCAGACCACCATACCCCACACCGCNNTTN] [+] EMBL AL692411 [GGCAGAATTCCCGAGGTTTGGAGCATGGCGACGAACCCTATNGTTTATTGTTTTCCTGGTCTCCCGGGCCAAAAGGACAGCACAACTAACACACACGGTACCACACATACAGGCATATACCCACTATACGGCCATCACCGCATGCATCACCGGCTATACAAATGCTAACTGTGTAAGCGCTATAAATGGTAGAGCTGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCTGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAANCAATTACCTCTTTTCCANTTGGGCGAACAAAACCCGAAAAACACCAAAGCACCTACACNGCGATTGTTGTACCACGGTAATAACCACTAATTGANCCTGTTGAAATCCATAACTTTCACTAACGCTAAGAATTAGGGCAACCAGTTGCGACCAACATGGGTCCGGGCACGCATTGGGGCACCGACTTATATCCACCGCACNATNAGCCCGCNGCTAACCAACCTTAAATANCTCAGAACAGCNGGNGCGGCAAACATTGGTTCTACCATAATACATCAGGCNTATGGTTCACGCACTTAACCTTAAAGTTTAAGTTAACNCCCAGGCGCGATTCTTAACCGNCGTTTTGCGCACCCNCACTTACCTTCNTTACNACAGGGGGCCANGCNCTTCCTCACATACCCCTTTTTCGCCCCACGCACCAGGTTACAATATGGCACGCACGGGCGCANNAGCNCGCACANCGCCNGANGTTGGGTNTCCCAACAAAGCAACGNAANANCCCNCCCTTACGTTTCTGTACNCANCCCGCCCCCTTTCCGCTANCTTAAGGGCCTTCCANCCCCGGAAAATAAGNAAAAAACGCCCCCGGCCGCGGCACGGCGCATAACCCGACCACCGGCGGCGCGGGCGACCCCATAGGTATNGGGCACGCCGGCTACACACGACCGCACACGGCCTTACACCTTGCTCCGGAGTGGCTTAANNGGGTACCTTNCNGCCCCTCTACACACACCCNTCNTCACATCAAAACNAAACNAAACACCNACCGGGNCTNTACNAGCCAANCTTACNGAGNAANCCTTCCGCCCGGCAGGCACACACATANCCNAAGCCAGACCACCATACCCCACACCGCNNTTN] consensusID : consensus_1486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CATCAGGCATCATCCCACTTCGGCCATCACCGCATGCATCACCGGCTTCAAATGCTACCGTGTAAGCGCTATAAATGGTAGGCGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAAAATTTCCTCTTTCCAATTGGCGAACAAAACCGAAACCCACACACCTCACGCGTGTGTACACGTTTACACTATGAACTGTTGAATCATACTTTCTAGCTAGATAGGCACAGTGCGACACTGGTCGGGCAGATGGGAAGATTATTCAGATTAGCCGCGTACACTATTTTTAACGGCGAATGTTTCTATTTTCTGTTACATACTACTACTACCAGCATCTACACTTCCCCCCTCTCTCAAGGCAGTTTTTATCCTTCCCACACGTTATTGTTGTTGCGATGCGAAAGCGATGTTCCAAACACGAACCCCTCTTTAAACGCCTCCTCTA] [+] EMBL BX616135 [CATCAGGCATCATCCCACTTCGGCCATCACCGCATGCATCACCGGCTTCAAATGCTACCGTGTAAGCGCTATAAATGGTAGGCGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCGCGTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAAAATTTCCTCTTTCCAATTGGCGAACAAAACCGAAACCCACACACCTCACGCGTGTGTACACGTTTACACTATGAACTGTTGAATCATACTTTCTAGCTAGATAGGCACAGTGCGACACTGGTCGGGCAGATGGGAAGATTATTCAGATTAGCCGCGTACACTATTTTTAACGGCGAATGTTTCTATTTTCTGTTACATACTACTACTACCAGCATCTACACTTCCCCCCTCTCTCAAGGCAGTTTTTATCCTTCCCACACGTTATTGTTGTTGCGATGCGAAAGCGATGTTCCAAACACGAACCCCTCTTTAAACGCCTCCTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1486#0 GGCAGAATTCCCGAGGTTTGGAGCATGGCGACGAACCCTATNGTTTATTGTTTTCCTGGT 60 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 CTCCCGGGCCAAAAGGACAGCACAACTAACACACACGGTACCACACATACAGGCATATAC 120 consensus_1486#1 ---------------------------------------------CAT-CAGGCATCATC 14 *** ******* * consensus_1486#0 CCACTATACGGCCATCACCGCATGCATCACCGGCTATACAAATGCTAACTGTGTAAGCGC 180 consensus_1486#1 CCACT--TCGGCCATCACCGCATGCATCACCGGCTT--CAAATGCTA-CCGTGTAAGCGC 69 ***** *************************** ********* * ********** consensus_1486#0 TATAAATGGTAGAGCTGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATCTGC 240 consensus_1486#1 TATAAATGGTAGG--CGCGATCTAGGTAACACACCACCAGCGGGGATCAAACAAATC-GC 126 ************ ***************************************** ** consensus_1486#0 GTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAANCAATTACCTCTTTTCC 300 consensus_1486#1 GTTTTACAGCACACCGTATAGGAATGAAAGTGTTAAGTTTAAAA--ATTTCCTCTTTCCA 184 ******************************************* *** ******* * consensus_1486#0 ANTTGGGCGAACAAAACCCGAAAAACACCAAAGCACCTACACNGCGATTGTTGTACCACG 360 consensus_1486#1 ATT--GGCGAACAAAACCGAAA-----CCCACACACCT----CACGCGTGT-GTAC-ACG 231 * * ************* ** ** * ***** ** *** **** *** consensus_1486#0 GTAATAACCACTAATTGANCCTGTTGAAATCCATAACTTTCACTAACGCTAAGAATTAGG 420 consensus_1486#1 TTTA----CACTA--TGAAC-TGTTGAA--TCATACTTTCTA-----GCTAGATA----G 273 * * ***** *** * ******* **** ** * **** * * consensus_1486#0 GCAACCAGTTGCGACCAACATGGGTCCGGGCACGCATTGGGGCACCGACTTATATCCACC 480 consensus_1486#1 GCA--CAGTG-----CGACACTGGTC-GGGCAGA---TGGGAAGATTATTCAGATTAGCC 322 *** **** * *** **** ***** **** * * * ** ** consensus_1486#0 GCACNATNAGCCCGCNGCTAACCAACCTTAAATANCTCAGAACA-GCNGGNGCGGCAAAC 539 consensus_1486#1 GCGTACACTATTTTTAACGGCGAATGTTTCTATTTTCTGTTACATACTACTACTACCAGC 382 ** * * ** ** *** * * * * * consensus_1486#0 ATTGGTTCTACCATAATACATCAGGCNTATGGTTCACGCACTTAACCTTAAAGTTTAAGT 599 consensus_1486#1 ATCTACACTTCCCCCCTCTCTCAAGGCAGTTTTTATCCTTCCCACACGTTATTGTTGTTG 442 ** ** ** * *** * * ** * * * * * * ** consensus_1486#0 TAACNCCCAGGCGCGATTCTTAACCGNCGTTTTGCGCACCCNCACTTACCTTCNTTACNA 659 consensus_1486#1 CGATGCGAAAGCGATGTTCCAAAC--ACG---AACCCCTCTTTAAACGCCTCCTCTA--- 494 * * * *** *** *** ** * * * * *** * ** consensus_1486#0 CAGGGGGCCANGCNCTTCCTCACATACCCCTTTTTCGCCCCACGCACCAGGTTACAATAT 719 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 GGCACGCACGGGCGCANNAGCNCGCACANCGCCNGANGTTGGGTNTCCCAACAAAGCAAC 779 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 GNAANANCCCNCCCTTACGTTTCTGTACNCANCCCGCCCCCTTTCCGCTANCTTAAGGGC 839 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 CTTCCANCCCCGGAAAATAAGNAAAAAACGCCCCCGGCCGCGGCACGGCGCATAACCCGA 899 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 CCACCGGCGGCGCGGGCGACCCCATAGGTATNGGGCACGCCGGCTACACACGACCGCACA 959 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 CGGCCTTACACCTTGCTCCGGAGTGGCTTAANNGGGTACCTTNCNGCCCCTCTACACACA 1019 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 CCCNTCNTCACATCAAAACNAAACNAAACACCNACCGGGNCTNTACNAGCCAANCTTACN 1079 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 GAGNAANCCTTCCGCCCGGCAGGCACACACATANCCNAAGCCAGACCACCATACCCCACA 1139 consensus_1486#1 ------------------------------------------------------------ consensus_1486#0 CCGCNNTTN 1148 consensus_1486#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||