These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [GTTACTATACAATATCGCGTTTAATGGTTCTTTTTAAACAGTTTTTCATAAATGGATGCATACAGTAGTTTTGACATTCATTGTACATTGACGATGACTCTGCGTTGATCTGCTCGTTTGAACGTTGTACCATGCGTGGGACGGTTGGAGATGATGTAAAAAAGCGCGTGTGGATCGCTGATTTGATGCTGATCTTTGCTTTGTGTTTGAGAACCACAGCCATGGCTATTGATAATGTTTGCCACTGTCGCACGTGTGTTGTAAATTGATGGGAGGAAGAAACATTGAACGTTACACACACGCACACACAGCACAGTGCAGCGGCATTTGACTTTCGGATTTTAAATTTCTTTCCTGTTATTTTGTTTCTTTTTCGTTTCTTACAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGAGTAGCCTCGATGGCACAGCGGCGCGCAGCAAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGAAACGGTTGTCGCGCATCGAAACACTGCGCCTGGCGATAACGTACATTGGCTTCATGTCGGAGCTGCTGGCCGG] [+] EMBL CNS08LNJ [GTTACTATACAATATCGCGTTTAATGGTTCTTTTTAAACAGTTTTTCATAAATGGATGCATACAGTAGTTTTGACATTCATTGTACATTGACGATGACTCTGCGTTGATCTGCTCGTTTGAACGTTGTACCATGCGTGGGACGGTTGGAGATGATGTAAAAAAGCGCGTGTGGATCGCTGATTTGATGCTGATCTTTGCTTTGTGTTTGAGAACCACAGCCATGGCTATTGATAATGTTTGCCACTGTCGCACGTGTGTTGTAAATTGATGGGAGGAAGAAACATTGAACGTTACACACACGCACACACAGCACAGTGCAGCGGCATTTGACTTTCGGATTTTAAATTTCTTTCCTGTTATTTTGTTTCTTTTTCGTTTCTTACAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGAGTAGCCTCGATGGCACAGCGGCGCGCAGCAAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGAAACGGTTGTCGCGCATCGAAACACTGCGCCTGGCGATAACGTACATTGGCTTCATGTCGGAGCTGCTGGCCGG] consensusID : consensus_1498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [CCGGACGTTCGTTCGGTGTGGGACACACAGTTTGAGGCCTCTGTCCGGAGACCAGAGCGGTGGCTGGAACGTTTAGTGGTGTTGAGTGTGCTAAGAAGTTTTATGTATGGAAATCCGTTCGAACGAAAGTTTCCACAAAGTGTAAATTAATGTGAAAAATAGCGAAACAAATTGTTAAAAAAAAACGGCCAAAACGGATTTTATTGAACAAAAAGGTCTACACAACATTAGAACAATATCACACAGAATGGAACCACCGTTTCCGCCGGATGTGGCACCCTTTACGCCAATCTGGGGCCAGGAAGCCCCGTCACCGATGGTACACTATCCGGAGCTGATGGCCGGCTTTCCGTGTGCAGATTTAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGGGTAGCGTCGATGGCACAGCGGCGCGCAGCCAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGA] [+] EMBL BM648871 [CCGGACGTTCGTTCGGTGTGGGACACACAGTTTGAGGCCTCTGTCCGGAGACCAGAGCGGTGGCTGGAACGTTTAGTGGTGTTGAGTGTGCTAAGAAGTTTTATGTATGGAAATCCGTTCGAACGAAAGTTTCCACAAAGTGTAAATTAATGTGAAAAATAGCGAAACAAATTGTTAAAAAAAAACGGCCAAAACGGATTTTATTGAACAAAAAGGTCTACACAACATTAGAACAATATCACACAGAATGGAACCACCGTTTCCGCCGGATGTGGCACCCTTTACGCCAATCTGGGGCCAGGAAGCCCCGTCACCGATGGTACACTATCCGGAGCTGATGGCCGGCTTTCCGTGTGCAGATTTAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGGGTAGCGTCGATGGCACAGCGGCGCGCAGCCAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1498#0 -----------GTTACTATACAATATCGCGTTTAATGGTTCTTTTTAAACAGTTTTTCAT 49 consensus_1498#1 CCGGACGTTCGTTCGGTGTGGGACACACAGTTTGAGGCCTCTGTCCGGAGACCAGAGCGG 60 * * * * * **** * * *** * * * * consensus_1498#0 AAATGGATGCATACAGTAGTTTTGACATTCATTGTACATTGACGATGACTCTGCGTTGAT 109 consensus_1498#1 TGGCTGGAACGTTTAGTGGTGTTGAG------TGTGCTAAGAAGTTTTATGTATGGAAAT 114 * * * *** ** **** *** * ** * * * * * ** consensus_1498#0 CTGCTCGTTTGAACGTTGT-ACCATGCGTGGGACGGTTGGAGATGATGTAAAAAAGCGCG 168 consensus_1498#1 CCGTTCGAACGAAAGTTTCCACAAAGTGTAAATTAATGTGAAAAATAGCGAAACAAATTG 174 * * *** *** *** ** * * ** * ** * * *** * * consensus_1498#0 TGTGGATCGCTGATTTGATGCTGATCTTTGCTTTGTGTTTGAGAACCACAGCCATGGCTA 228 consensus_1498#1 TTAAAAAAAAACGGCCAAAACGGATTTTA---TTGAACAAAAAGGTC-TACACAACATTA 230 * * * * *** ** *** * * * ** ** consensus_1498#0 TTGATAATGTTTGCCACTGTCGCACGTGTGTTGTAAATTGATGGGAGGAAGAAACATTGA 288 consensus_1498#1 G-AACAATATCACACAGAATGGAACCACCGTTTCCGCCGGATGTGGC------ACCCTTT 283 * *** * ** * * ** *** **** * ** * consensus_1498#0 ACGTTACACACACGCACACACAGCACAGTGCAGCGGCATTTGACTTTCGGATTTTAAATT 348 consensus_1498#1 ACGCCA-ATCTGGGGCCAGGAAGCCCCGT-CACCGATGGTACACT-----ATCCGGAGCT 336 *** * * * ** *** * ** ** ** * *** ** * * consensus_1498#0 TCTTTCCTGTTATTTTGTTTCTTTTTCGTTTCTTACAGCTATCTGGCCCCGGCAGCAGGT 408 consensus_1498#1 GATGGCCGGCT------TTCCGTGTGCAGATTT---AGCTATCTGGCCCCGGCAGCAGGT 387 * ** * * ** * * * * * * ************************ consensus_1498#0 CGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGG 468 consensus_1498#1 CGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGG 447 ************************************************************ consensus_1498#0 GTCGACAAAGAAAACGCGCCGCCGAGTAGCCTCGATGGCACAGCGGCGCGCAGCAAACAT 528 consensus_1498#1 GTCGACAAAGAAAACGCGCCGCCGGGTAGCGTCGATGGCACAGCGGCGCGCAGCCAACAT 507 ************************ ***** *********************** ***** consensus_1498#0 ACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGT 588 consensus_1498#1 ACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGT 567 ************************************************************ consensus_1498#0 GCCCACCTTCGCGTACGAGAAACGGTTGTCGCGCATCGAAACACTGCGCCTGGCGATAAC 648 consensus_1498#1 GCCCACCTTCGCGTACGAGA---------------------------------------- 587 ******************** consensus_1498#0 GTACATTGGCTTCATGTCGGAGCTGCTGGCCGG 681 consensus_1498#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||