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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence
[AGGGTATGCAGCCAGTTTTCCAAGAGTTTCTATTCCTACCTGACCGCAATATGTGAAGGTTCGTTTGGGCAGTTTTCCAACCTTGTCAAATGGCGGGCAGAAATACTGGAATTGATCAATCGCTCGCCGCAGAAGGACTCGCAAATCGAACGGTACATATTTCGACGCTGCTTAAAGCTGCCGCAGGCGGAAAGTGGAGAACAGCCCAAGTACAGCAGTTCGCTCTACTGGAAGTATCTGGTGTTTGAGATGCTGTTTCTCTGGAATGCACTGAGCAGCTGCAACGAGGAGCAACTGGCAAGCATGGTGGCGGACTGTTCGCAACCGACGGACGCGTTCAGCGAGCCGATGGTTGGAATCTCCCGGTTGATTTTAGGTGCCTGTCTGAGCTGTCTGGCCCGCTACGAGGAAGCAATTGGCGCGTTTCGGGAGTGTATCTTCATGCGGGAAACGTTAGAGCACCAGGAGCAGCAGGATATGCATATTTCTGCCTTTGCATACTACGAACTGGCCGTGCTGCTGCTTCGCCAAGATACTGTGGGCGAAGATGGCAGAGCAGAAGCACGCCGATTGCTTCTGCACGCGCAGCAACACTTTAAGAACTACGACTTTGATAATCGCGTCAGCGTACGCATTCACACCGTGCTGAAGANGCTGGATTAAGGGGCTGCAGGGTCGGGAAGCGCCTTGCGGGAAGCATTTTATAAGTTTAGACGATATAGTTTGATAGTGCCTTA]
[+] EMBL BX621672 [AGGGTATGCAGCCAGTTTTCCAAGAGTTTCTATTCCTACCTGACCGCAATATGTGAAGGTTCGTTTGGGCAGTTTTCCAACCTTGTCAAATGGCGGGCAGAAATACTGGAATTGATCAATCGCTCGCCGCAGAAGGACTCGCAAATCGAACGGTACATATTTCGACGCTGCTTAAAGCTGCCGCAGGCGGAAAGTGGAGAACAGCCCAAGTACAGCAGTTCGCTCTACTGGAAGTATCTGGTGTTTGAGATGCTGTTTCTCTGGAATGCACTGAGCAGCTGCAACGAGGAGCAACTGGCAAGCATGGTGGCGGACTGTTCGCAACCGACGGACGCGTTCAGCGAGCCGATGGTTGGAATCTCCCGGTTGATTTTAGGTGCCTGTCTGAGCTGTCTGGCCCGCTACGAGGAAGCAATTGGCGCGTTTCGGGAGTGTATCTTCATGCGGGAAACGTTAGAGCACCAGGAGCAGCAGGATATGCATATTTCTGCCTTTGCATACTACGAACTGGCCGTGCTGCTGCTTCGCCAAGATACTGTGGGCGAAGATGGCAGAGCAGAAGCACGCCGATTGCTTCTGCACGCGCAGCAACACTTTAAGAACTACGACTTTGATAATCGCGTCAGCGTACGCATTCACACCGTGCTGAAGANGCTGGATTAAGGGGCTGCAGGGTCGGGAAGCGCCTTGCGGGAAGCATTTTATAAGTTTAGACGATATAGTTTGATAGTGCCTTA]
consensusID : consensus_1524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[TCGAGCGCAAGAATCCCGCACGAGTGTNATCCCCCAGTGGTATGCAGGCAGTTTTCCAAGAGTTTCTATTCCGTACCTGACCGCAATATGTGAACGGTTCGTATATGGGCAGGTTTTCCAACCTTGTCAAACTGGCTCNGGCAGAAATACTGGGAATTGATCAACTCCGCTCGCCTGCAGAAGGACTCGCGAAATCGGAACGGTACATATTTCGAGCGCTGCTTAAAGCGTGGCCGCAGGCGGAAAGTGGCGGAACCATGCCCAAGGTAACACGCCAGGTTCGCTCTTACTTGGACAGAGTAATCTGGGTGTTCTGANGATGCCTGTNGNTCGTCCTGGGAAAGTGCAACTGGAGGACAGGCTTGGCCAAACGCAAGGGANGCGCAACACTTGGGGCANAAGCAATTGGTTGGGCGGGGACTTGTTTCGCCAAACCGGAAC]
[+] EMBL BX469052 [TCGAGCGCAAGAATCCCGCACGAGTGTNATCCCCCAGTGGTATGCAGGCAGTTTTCCAAGAGTTTCTATTCCGTACCTGACCGCAATATGTGAACGGTTCGTATATGGGCAGGTTTTCCAACCTTGTCAAACTGGCTCNGGCAGAAATACTGGGAATTGATCAACTCCGCTCGCCTGCAGAAGGACTCGCGAAATCGGAACGGTACATATTTCGAGCGCTGCTTAAAGCGTGGCCGCAGGCGGAAAGTGGCGGAACCATGCCCAAGGTAACACGCCAGGTTCGCTCTTACTTGGACAGAGTAATCTGGGTGTTCTGANGATGCCTGTNGNTCGTCCTGGGAAAGTGCAACTGGAGGACAGGCTTGGCCAAACGCAAGGGANGCGCAACACTTGGGGCANAAGCAATTGGTTGGGCGGGGACTTGTTTCGCCAAACCGGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1524#0 ------------------------------------AGGGTATGCAGCCAGTTTTCCAAG 24
consensus_1524#1 TCGAGCGCAAGAATCCCGCACGAGTGTNATCCCCCAGTGGTATGCAGGCAGTTTTCCAAG 60
********* ************
consensus_1524#0 AGTTTCTATTCC-TACCTGACCGCAATATGTGAA-GGTTCGTTT--GGGCAG-TTTTCCA 79
consensus_1524#1 AGTTTCTATTCCGTACCTGACCGCAATATGTGAACGGTTCGTATATGGGCAGGTTTTCCA 120
************ ********************* ******* * ****** *******
consensus_1524#0 ACCTTGTCAAATGG---CGGGCAGAAATACTGG-AATTGATCAAT--CGCTCGCC-GCAG 132
consensus_1524#1 ACCTTGTCAAACTGGCTCNGGCAGAAATACTGGGAATTGATCAACTCCGCTCGCCTGCAG 180
*********** * * ************** ********** ******** ****
consensus_1524#0 AAGGACTCGC-AAATCG-AACGGTACATATTTCGA-CGCTGCTTAAAGCT--GCCGCAGG 187
consensus_1524#1 AAGGACTCGCGAAATCGGAACGGTACATATTTCGAGCGCTGCTTAAAGCGTGGCCGCAGG 240
********** ****** ***************** ************* ********
consensus_1524#0 CGGAAAGTGGAGAACAGCCCAAGTACAGCAGTTCGCTCTACTGGAAGT-ATCTGGTGTTT 246
consensus_1524#1 CGGAAAGTGGCGGA-ACCATGCCCAAGGTAACACGCCAGGTTCGCTCTTACTTGGACAGA 299
********** * * * * * * * *** * * * * ***
consensus_1524#0 GAGATGCTGTTTCTCTGGA-ATGCAC-TGAGCAGCTGCAACGAGGAGCAACTGGCAAGCA 304
consensus_1524#1 GTAATCTGGGTGTTCTGANGATGCCTGTNGNTCGTCCTGGGAAAGTGCAACTGGAGGACA 359
* ** * * **** **** * * * * ******** **
consensus_1524#0 TGGTGGCGGACTGTTCGCAACCGACGGACGCGTTCAGCGAGCCGATGGTTGGAATCTCCC 364
consensus_1524#1 -------GGCTTGGCCAAACGCAAGGGANGCG-----CAACACTTGGGGCANAAGCAATT 407
** ** * * * * *** *** * * * ** ** *
consensus_1524#0 GGTTGATTTTAGGTGCCTGTCTGAGCTGTCTGGCCCGCTACGAGGAAGCAATTGGCGCGT 424
consensus_1524#1 GGTTGGG--CGGGGACTTGTTTCGCCAAACCGGAAC------------------------ 441
***** ** * *** * * * ** *
consensus_1524#0 TTCGGGAGTGTATCTTCATGCGGGAAACGTTAGAGCACCAGGAGCAGCAGGATATGCATA 484
consensus_1524#1 ------------------------------------------------------------
consensus_1524#0 TTTCTGCCTTTGCATACTACGAACTGGCCGTGCTGCTGCTTCGCCAAGATACTGTGGGCG 544
consensus_1524#1 ------------------------------------------------------------
consensus_1524#0 AAGATGGCAGAGCAGAAGCACGCCGATTGCTTCTGCACGCGCAGCAACACTTTAAGAACT 604
consensus_1524#1 ------------------------------------------------------------
consensus_1524#0 ACGACTTTGATAATCGCGTCAGCGTACGCATTCACACCGTGCTGAAGANGCTGGATTAAG 664
consensus_1524#1 ------------------------------------------------------------
consensus_1524#0 GGGCTGCAGGGTCGGGAAGCGCCTTGCGGGAAGCATTTTATAAGTTTAGACGATATAGTT 724
consensus_1524#1 ------------------------------------------------------------
consensus_1524#0 TGATAGTGCCTTA 737
consensus_1524#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||