cluster # 153

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Anopheles gambiae
cluster # 153 cluster # 153 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_153#0 length = 519 sequences # 1

consensus_153#1 length = 399 sequences # 1

consensusID : consensus_153#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [CAGATCGGCCCAGGATTTAACTCGTTCAAGCGAGAAGTTGTGCCCGCATCGTCTGAAGCGAAAGAAAAGCGCCCGGTGGTTGTTCCCCACTATTTTGCCTCAGTGCTTTTTCGCGTGTGTCCTACCGACCGAGACCTACCCCTGTACCAGCGCAGACAGATGGCGTACTGAACCGAAGAACGGGCCCATTCGATCCCCGCTAACCCCAACCAGAACCAGACAAGCACTGCTAACCAGAGCTATCTGGCACTTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCNCCGCTACTTCAAGAACGTACTTNCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGACAGCCAGCTGCGGAGGAGGGCACCTTTGCCGNGCACATTCTACGGGCATTCCAAGTCGGAACCGTGTNCAGAGGGGATGAGAGAGGAGTGGCCGCGCTAGATNGTANACGGAGTGCAACCGGATAGTCGCTACTGCTCTCCCGTGGATCCCTATATATAT]

[+] EMBL AL694523             [CAGATCGGCCCAGGATTTAACTCGTTCAAGCGAGAAGTTGTGCCCGCATCGTCTGAAGCGAAAGAAAAGCGCCCGGTGGTTGTTCCCCACTATTTTGCCTCAGTGCTTTTTCGCGTGTGTCCTACCGACCGAGACCTACCCCTGTACCAGCGCAGACAGATGGCGTACTGAACCGAAGAACGGGCCCATTCGATCCCCGCTAACCCCAACCAGAACCAGACAAGCACTGCTAACCAGAGCTATCTGGCACTTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCNCCGCTACTTCAAGAACGTACTTNCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGACAGCCAGCTGCGGAGGAGGGCACCTTTGCCGNGCACATTCTACGGGCATTCCAAGTCGGAACCGTGTNCAGAGGGGATGAGAGAGGAGTGGCCGCGCTAGATNGTANACGGAGTGCAACCGGATAGTCGCTACTGCTCTCCCGTGGATCCCTATATATAT]




>consensus_153#0
CAGATCGGCCCAGGATTTAACTCGTTCAAGCGAGAAGTTGTGCCCGCATCGTCTGAAGCG
AAAGAAAAGCGCCCGGTGGTTGTTCCCCACTATTTTGCCTCAGTGCTTTTTCGCGTGTGT
CCTACCGACCGAGACCTACCCCTGTACCAGCGCAGACAGATGGCGTACTGAACCGAAGAA
CGGGCCCATTCGATCCCCGCTAACCCCAACCAGAACCAGACAAGCACTGCTAACCAGAGC
TATCTGGCACTTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCNCCG
CTACTTCAAGAACGTACTTNCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGAC
AGCCAGCTGCGGAGGAGGGCACCTTTGCCGNGCACATTCTACGGGCATTCCAAGTCGGAA
CCGTGTNCAGAGGGGATGAGAGAGGAGTGGCCGCGCTAGATNGTANACGGAGTGCAACCG
GATAGTCGCTACTGCTCTCCCGTGGATCCCTATATATAT

consensusID : consensus_153#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [TTTGTTTTACATTATTCATTAATTAGACGTGTTTACTGCAGCATTTGGGATTTTGCTTGTTTAGTTTTTTTTCTACTATGTTGCACGTGTTGCCCTTCGCGCTTTTCACCCTATTAGTGTATATATGCATGTGTGTGAATGTTTTGCTTTGCACGCTCTTAACACATTCTTTGTTTTATAAAAATAAGTTGGAAAAATTACTCAAAAAACAAACTATCCACACCGTACTCGAGAAAAAAGAAGCCTATACACACCACTTACAACCACCCGCAAGATTAGGCCTTTCTATGCACAGAGCTGGCTCTTACAGTGTGTTGCAACACACCTGTCTGTGTGTGTGTTCTATCTCGGCTGGAGGGATTCAATGTTGGCCTATGATAAATAAAAAAGCGCCTGCAT]

[+] EMBL AGA284176            [TTTGTTTTACATTATTCATTAATTAGACGTGTTTACTGCAGCATTTGGGATTTTGCTTGTTTAGTTTTTTTTCTACTATGTTGCACGTGTTGCCCTTCGCGCTTTTCACCCTATTAGTGTATATATGCATGTGTGTGAATGTTTTGCTTTGCACGCTCTTAACACATTCTTTGTTTTATAAAAATAAGTTGGAAAAATTACTCAAAAAACAAACTATCCACACCGTACTCGAGAAAAAAGAAGCCTATACACACCACTTACAACCACCCGCAAGATTAGGCCTTTCTATGCACAGAGCTGGCTCTTACAGTGTGTTGCAACACACCTGTCTGTGTGTGTGTTCTATCTCGGCTGGAGGGATTCAATGTTGGCCTATGATAAATAAAAAAGCGCCTGCAT]




>consensus_153#1
TTTGTTTTACATTATTCATTAATTAGACGTGTTTACTGCAGCATTTGGGATTTTGCTTGT
TTAGTTTTTTTTCTACTATGTTGCACGTGTTGCCCTTCGCGCTTTTCACCCTATTAGTGT
ATATATGCATGTGTGTGAATGTTTTGCTTTGCACGCTCTTAACACATTCTTTGTTTTATA
AAAATAAGTTGGAAAAATTACTCAAAAAACAAACTATCCACACCGTACTCGAGAAAAAAG
AAGCCTATACACACCACTTACAACCACCCGCAAGATTAGGCCTTTCTATGCACAGAGCTG
GCTCTTACAGTGTGTTGCAACACACCTGTCTGTGTGTGTGTTCTATCTCGGCTGGAGGGA
TTCAATGTTGGCCTATGATAAATAAAAAAGCGCCTGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_153#0      CAGATCGGCCCAGGATTTAACTCGTTCA--AGCGAGAAGTTGTGCCCGCATCGTCTGAAG 58
consensus_153#1      ----------TTTGTTTTACATTATTCATTAATTAGACGTGTTTACTGCAGCATTTG--- 47
                                  * ****  *  ****  *   *** **  *  * *** * * **   

consensus_153#0      CGAAAGAAAAGCGCCCGGTGGTTGTTCCCCACTATTTTGCCTCAGTGCTTTTTCGCGTGT 118
consensus_153#1      -GGATTTTGCTTGTTTAGT--TTTTTTTCTACTATGTTGCACGTGTTGCCCTTCGCGCTT 104
                      * *        *    **  ** **  * ***** ****    **     ******  *

consensus_153#0      GTCCTACCGACCGAGACCTACCCCTGTACCAGCGCAGACAGATGGCGTACTGAACCGAAG 178
consensus_153#1      TTCACCCTATTAGTG---TATATATGCATGTGTGTGAATGTTTTGCTTTGCACGCTCTTA 161
                      **   *     * *   **    ** *   * *   *    * ** *      *     

consensus_153#0      AACGGGCCCATTCGATCCCCGCTAACCCCAACCAGAACCAGACAAGCACTGCTAACCAGA 238
consensus_153#1      A-----CACATTCTTTGTTTTATAA----AAATAAGTTGGAAAAATTACTCAAAAAACAA 212
                     *     * *****  *      ***    **  *       * **  ***   **    *

consensus_153#0      GCTATCTGGCACTTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCNC 298
consensus_153#1      ACTATC---CACACCGTACT----CGAGAAAAAAGAAGCCTATACACACCACTTACA-AC 264
                      *****   ***     **     ******     * * * *     ****  **    *

consensus_153#0      CGCTACTTCAAGAACGTACTTNCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGG 358
consensus_153#1      CAC--CCGCAAGATTAGGCCTTTCTATGCACA-GAGCTGGCTCTTACAGTGTGTTGCAAC 321
                     * *  *  *****     * *     *  *   *  *   *** *    ** *  *    

consensus_153#0      ACAGCCAGCTGCGGAGGAGGGC-ACCTTTGCCGNGCACATTCTACG--GGCATTCCA-AG 414
consensus_153#1      ACACCTGTCTGTGTGTGTGTTCTATCTCGGCTGGAGGGATTCAATGTTGGCCTATGATAA 381
                     *** *   *** *   * *  * * **  ** *     **** * *  *** *   * * 

consensus_153#0      TCGGAACCGTGTNCAGAGGGGATGAGAGAGGAGTGGCCGCGCTAGATNGTANACGGAGTG 474
consensus_153#1      ATAAAAAAGCGCCTGCAT------------------------------------------ 399
                         **  * *     *                                           

consensus_153#0      CAACCGGATAGTCGCTACTGCTCTCCCGTGGATCCCTATATATAT 519
consensus_153#1      ---------------------------------------------