These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [CTCTTTTAAGTTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCCGTCACGTTCACGTTGGTCGAGGGCAAGGGACCAGTGCACATCCACGGGCTGCATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATATGGAAGAGATGGAGGAGGAAGTGCTGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAAGAAGCCAGGGCTGACCAACAACTCCAAGGGCAAGCCGGGTGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCATCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTTCTT] [+] EMBL CNS0906Y [CTCTTTTAAGTTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCCGTCACGTTCACGTTGGTCGAGGGCAAGGGACCAGTGCACATCCACGGGCTGCATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATATGGAAGAGATGGAGGAGGAAGTGCTGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAAGAAGCCAGGGCTGACCAACAACTCCAAGGGCAAGCCGGGTGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCATCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTTCTT] consensusID : consensus_154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CAGAATCGCCACGAGNTAGTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCCGTCACGTTCACGTTGGTTGAGGGCAAGGGACCGGTGCACATCCACGGGCTGCATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATGGAGGAGATGGAGGAGGAAGTGCTGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAANGAAGCCAAAACTGACCAAGCAACTCCAAGGGCAAGCCGGGCGCAGCAGGCCGGCAGGTCCCGCCCGGTAATCGACAAAAACCGAAAGAGGAAAATAAACGGGACACGTTCCGTGCCACCGGACACCANGCTCTG] [+] EMBL BX467290 [CAGAATCGCCACGAGNTAGTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCCGTCACGTTCACGTTGGTTGAGGGCAAGGGACCGGTGCACATCCACGGGCTGCATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATGGAGGAGATGGAGGAGGAAGTGCTGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAANGAAGCCAAAACTGACCAAGCAACTCCAAGGGCAAGCCGGGCGCAGCAGGCCGGCAGGTCCCGCCCGGTAATCGACAAAAACCGAAAGAGGAAAATAAACGGGACACGTTCCGTGCCACCGGACACCANGCTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_154#0 ------CTCTTTTAAGT--TTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTG 52 consensus_154#1 CAGAATCGCCACGAGNTAGTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTG 60 * * * * ***************************************** consensus_154#0 AAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACG 112 consensus_154#1 AAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACG 120 ************************************************************ consensus_154#0 GAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGG 172 consensus_154#1 GAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGG 180 ************************************************************ consensus_154#0 GTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCG 232 consensus_154#1 GTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCG 240 ************************************************************ consensus_154#0 CGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATAC 292 consensus_154#1 CGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATAC 300 ************************************************************ consensus_154#0 CGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCG 352 consensus_154#1 CGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCG 360 ************************************************************ consensus_154#0 ACGCGCCCGTCACGTTCACGTTGGTCGAGGGCAAGGGACCAGTGCACATCCACGGGCTGC 412 consensus_154#1 ACGCGCCCGTCACGTTCACGTTGGTTGAGGGCAAGGGACCGGTGCACATCCACGGGCTGC 420 ************************* ************** ******************* consensus_154#0 ATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATATGGAAGAGATGGAGGAGGAAGTGC 472 consensus_154#1 ATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGAT--GGAGGAGATGGAGGAGGAAGTGC 478 *********************************** *** ******************* consensus_154#0 TGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAAG-AAG 531 consensus_154#1 TGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAANGAAG 538 ******************************************************* *** consensus_154#0 CCAGGGCTGACCAA-CAACTCCAAGGGCAAGCCGGGTGCAGC-GGCCGGC-GGTCCCGCC 588 consensus_154#1 CCAAAACTGACCAAGCAACTCCAAGGGCAAGCCGGGCGCAGCAGGCCGGCAGGTCCCGCC 598 *** ******** ********************* ***** ******* ********* consensus_154#0 -GGTAAT-GACAAAAACCGAAAGAGGAAA-TAAACGGGACACGTTCCGTGC-ACCGGCCA 644 consensus_154#1 CGGTAATCGACAAAAACCGAAAGAGGAAAATAAACGGGACACGTTCCGTGCCACCGGACA 658 ****** ********************* ********************* ***** ** consensus_154#0 TCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCAT 704 consensus_154#1 CCANGCTCTG-------------------------------------------------- 668 ** ***** consensus_154#0 CATTCCTCACCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG 764 consensus_154#1 ------------------------------------------------------------ consensus_154#0 AGCTTCTT 772 consensus_154#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||