cluster # 1542

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Anopheles gambiae
cluster # 1542 cluster # 1542 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1542#0 length = 681 sequences # 1

consensus_1542#1 length = 476 sequences # 1

consensusID : consensus_1542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CCGCTGATCATATAGTTTCTCCTCAAGCGCACATCGCATACCGTTATTCCCTCTCATCGTTACGTCCTATTTGTTGGTAGCAAAACAAGAACGCACCCATAAAACTCCTCTTGCAAGATCGTCAGTGCCGTGTGGTCGCCACCAACACTCATCACTTGTCGCAATGTCAGTCAACGTAAGGCAACGAAACCTAAGCGTTGCTTTTAGGTTTTTCAATTTTCAATTATTTTTTTAACAACCCAAGAAGACAATCTGTAACCCTAGACAGATTGCTCCATCAAAATTTGTGGTCTCAGTCTCAGCATATGCTTGTCAAAATATGTATCTGCAGCCGATGCTGTTCGAGGCGAGCAGTCCCGCCCTACCGACGCTGCCGCCCCTTGACATCTCGGGCACAATGACGGGCATTTCGAATGAAATCACCAACGATACGCAAGCAATTGCGAACGAGCTGCAGAAGGAAGTCGCGGTGCTGAAAACGTTGGCAGCACCGATCGACATTGGGCTGGCGCCCGGACTGCAAAGTCTGGTGTCGTCGGGCTTTGGTGTGATTCCCCCGCCTGAGCAGCCAACAACACCGACGACCGTGTCGGATGGCAAGCCGGACAAACTCAAAGAGCAGAGCACACCGCCGCCCTCCCAACCAGACGAACCGGCGCCCTTCTCACTGACGTCTATTTT]

[+] EMBL BM634077             [CCGCTGATCATATAGTTTCTCCTCAAGCGCACATCGCATACCGTTATTCCCTCTCATCGTTACGTCCTATTTGTTGGTAGCAAAACAAGAACGCACCCATAAAACTCCTCTTGCAAGATCGTCAGTGCCGTGTGGTCGCCACCAACACTCATCACTTGTCGCAATGTCAGTCAACGTAAGGCAACGAAACCTAAGCGTTGCTTTTAGGTTTTTCAATTTTCAATTATTTTTTTAACAACCCAAGAAGACAATCTGTAACCCTAGACAGATTGCTCCATCAAAATTTGTGGTCTCAGTCTCAGCATATGCTTGTCAAAATATGTATCTGCAGCCGATGCTGTTCGAGGCGAGCAGTCCCGCCCTACCGACGCTGCCGCCCCTTGACATCTCGGGCACAATGACGGGCATTTCGAATGAAATCACCAACGATACGCAAGCAATTGCGAACGAGCTGCAGAAGGAAGTCGCGGTGCTGAAAACGTTGGCAGCACCGATCGACATTGGGCTGGCGCCCGGACTGCAAAGTCTGGTGTCGTCGGGCTTTGGTGTGATTCCCCCGCCTGAGCAGCCAACAACACCGACGACCGTGTCGGATGGCAAGCCGGACAAACTCAAAGAGCAGAGCACACCGCCGCCCTCCCAACCAGACGAACCGGCGCCCTTCTCACTGACGTCTATTTT]




>consensus_1542#0
CCGCTGATCATATAGTTTCTCCTCAAGCGCACATCGCATACCGTTATTCCCTCTCATCGT
TACGTCCTATTTGTTGGTAGCAAAACAAGAACGCACCCATAAAACTCCTCTTGCAAGATC
GTCAGTGCCGTGTGGTCGCCACCAACACTCATCACTTGTCGCAATGTCAGTCAACGTAAG
GCAACGAAACCTAAGCGTTGCTTTTAGGTTTTTCAATTTTCAATTATTTTTTTAACAACC
CAAGAAGACAATCTGTAACCCTAGACAGATTGCTCCATCAAAATTTGTGGTCTCAGTCTC
AGCATATGCTTGTCAAAATATGTATCTGCAGCCGATGCTGTTCGAGGCGAGCAGTCCCGC
CCTACCGACGCTGCCGCCCCTTGACATCTCGGGCACAATGACGGGCATTTCGAATGAAAT
CACCAACGATACGCAAGCAATTGCGAACGAGCTGCAGAAGGAAGTCGCGGTGCTGAAAAC
GTTGGCAGCACCGATCGACATTGGGCTGGCGCCCGGACTGCAAAGTCTGGTGTCGTCGGG
CTTTGGTGTGATTCCCCCGCCTGAGCAGCCAACAACACCGACGACCGTGTCGGATGGCAA
GCCGGACAAACTCAAAGAGCAGAGCACACCGCCGCCCTCCCAACCAGACGAACCGGCGCC
CTTCTCACTGACGTCTATTTT

consensusID : consensus_1542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [CCCCGAGTGATATCTGCAGCCGATGCTGTNCGAGGCGAGCAGTCCCGCCCTACCGACGCTGCCGCCCCTTGACATCTCGGGCACAATGACGGGCATTTCGAATGAAATCACCAACGATACGCAAGCAATTGCGAACGAGCTGCAGAAGGAAGTCGCGGTGCTGAAAACGTTGGCAGCACCGATCGACATTGGGCTGGCGCCCGGACTGCAAAGTCTGGTGTCGTCGGGCTTTGGTGTGATTCCCCCGCCTGAGCAGCCAACAACACCGACGACCGTGTCGGATGGCAAGCCGGACAAACTCAAAGAGCAGAGCACACCGCCGCCCTCCCAACCAGACGAACCGGCGCCCTTCTCACTGACGTCTATTTTTGGATTCTAGTGCATCGTTGAGTGTTTGATTTGCTGAGAGCGAAGTGAGTCCCCGGTTCGGTGAGATACTCGCTTCGCTTTGTTCTGTATTTGATGCTTGATGTATG]

[+] EMBL AL692655             [CCCCGAGTGATATCTGCAGCCGATGCTGTNCGAGGCGAGCAGTCCCGCCCTACCGACGCTGCCGCCCCTTGACATCTCGGGCACAATGACGGGCATTTCGAATGAAATCACCAACGATACGCAAGCAATTGCGAACGAGCTGCAGAAGGAAGTCGCGGTGCTGAAAACGTTGGCAGCACCGATCGACATTGGGCTGGCGCCCGGACTGCAAAGTCTGGTGTCGTCGGGCTTTGGTGTGATTCCCCCGCCTGAGCAGCCAACAACACCGACGACCGTGTCGGATGGCAAGCCGGACAAACTCAAAGAGCAGAGCACACCGCCGCCCTCCCAACCAGACGAACCGGCGCCCTTCTCACTGACGTCTATTTTTGGATTCTAGTGCATCGTTGAGTGTTTGATTTGCTGAGAGCGAAGTGAGTCCCCGGTTCGGTGAGATACTCGCTTCGCTTTGTTCTGTATTTGATGCTTGATGTATG]




>consensus_1542#1
CCCCGAGTGATATCTGCAGCCGATGCTGTNCGAGGCGAGCAGTCCCGCCCTACCGACGCT
GCCGCCCCTTGACATCTCGGGCACAATGACGGGCATTTCGAATGAAATCACCAACGATAC
GCAAGCAATTGCGAACGAGCTGCAGAAGGAAGTCGCGGTGCTGAAAACGTTGGCAGCACC
GATCGACATTGGGCTGGCGCCCGGACTGCAAAGTCTGGTGTCGTCGGGCTTTGGTGTGAT
TCCCCCGCCTGAGCAGCCAACAACACCGACGACCGTGTCGGATGGCAAGCCGGACAAACT
CAAAGAGCAGAGCACACCGCCGCCCTCCCAACCAGACGAACCGGCGCCCTTCTCACTGAC
GTCTATTTTTGGATTCTAGTGCATCGTTGAGTGTTTGATTTGCTGAGAGCGAAGTGAGTC
CCCGGTTCGGTGAGATACTCGCTTCGCTTTGTTCTGTATTTGATGCTTGATGTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1542#0      CCGCTGATCATATAGTTTCTCCTCAAGCGCACATCGCATACCGTTATTCCCTCTCATCGT 60
consensus_1542#1      ------------------------------------------------------------
                                                                                  

consensus_1542#0      TACGTCCTATTTGTTGGTAGCAAAACAAGAACGCACCCATAAAACTCCTCTTGCAAGATC 120
consensus_1542#1      ------------------------------------------------------------
                                                                                  

consensus_1542#0      GTCAGTGCCGTGTGGTCGCCACCAACACTCATCACTTGTCGCAATGTCAGTCAACGTAAG 180
consensus_1542#1      ------------------------------------------------------------
                                                                                  

consensus_1542#0      GCAACGAAACCTAAGCGTTGCTTTTAGGTTTTTCAATTTTCAATTATTTTTTTAACAACC 240
consensus_1542#1      ------------------------------------------------------------
                                                                                  

consensus_1542#0      CAAGAAGACAATCTGTAACCCTAGACAGATTGCTCCATCAAAATTTGTGGTCTCAGTCTC 300
consensus_1542#1      ------------------------------------------------------------
                                                                                  

consensus_1542#0      AGCATATGCTTGTCAAAATATGTATCTGCAGCCGATGCTGTTCGAGGCGAGCAGTCCCGC 360
consensus_1542#1      -----------CCCCGAGTG-ATATCTGCAGCCGATGCTGTNCGAGGCGAGCAGTCCCGC 48
                                   *  * *   ******************* ******************

consensus_1542#0      CCTACCGACGCTGCCGCCCCTTGACATCTCGGGCACAATGACGGGCATTTCGAATGAAAT 420
consensus_1542#1      CCTACCGACGCTGCCGCCCCTTGACATCTCGGGCACAATGACGGGCATTTCGAATGAAAT 108
                      ************************************************************

consensus_1542#0      CACCAACGATACGCAAGCAATTGCGAACGAGCTGCAGAAGGAAGTCGCGGTGCTGAAAAC 480
consensus_1542#1      CACCAACGATACGCAAGCAATTGCGAACGAGCTGCAGAAGGAAGTCGCGGTGCTGAAAAC 168
                      ************************************************************

consensus_1542#0      GTTGGCAGCACCGATCGACATTGGGCTGGCGCCCGGACTGCAAAGTCTGGTGTCGTCGGG 540
consensus_1542#1      GTTGGCAGCACCGATCGACATTGGGCTGGCGCCCGGACTGCAAAGTCTGGTGTCGTCGGG 228
                      ************************************************************

consensus_1542#0      CTTTGGTGTGATTCCCCCGCCTGAGCAGCCAACAACACCGACGACCGTGTCGGATGGCAA 600
consensus_1542#1      CTTTGGTGTGATTCCCCCGCCTGAGCAGCCAACAACACCGACGACCGTGTCGGATGGCAA 288
                      ************************************************************

consensus_1542#0      GCCGGACAAACTCAAAGAGCAGAGCACACCGCCGCCCTCCCAACCAGACGAACCGGCGCC 660
consensus_1542#1      GCCGGACAAACTCAAAGAGCAGAGCACACCGCCGCCCTCCCAACCAGACGAACCGGCGCC 348
                      ************************************************************

consensus_1542#0      CTTCTCACTGACGTCTATTTT--------------------------------------- 681
consensus_1542#1      CTTCTCACTGACGTCTATTTTTGGATTCTAGTGCATCGTTGAGTGTTTGATTTGCTGAGA 408
                      *********************                                       

consensus_1542#0      ------------------------------------------------------------
consensus_1542#1      GCGAAGTGAGTCCCCGGTTCGGTGAGATACTCGCTTCGCTTTGTTCTGTATTTGATGCTT 468
                                                                                  

consensus_1542#0      --------
consensus_1542#1      GATGTATG 476