These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TCCCCCGAGGTATAATGAAGGTCGTTTGTTAGCACAATTACTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGGAACCTCATCGAACGAGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGGTTTGTCCTTGCTTGTAATGTTCATATCACAGTTTTACTCCGACAGACAAGTAAGCTCAATCGGTAGTAGGTAATCGTTATCGCGTTTGTCGCGCGCAGCAATCGACACAACAGAAACAGAAATGGCAATTTTACAGCAAATCAGCGGGCATAGAGGAGGCATGAGCTGCGCATGTGAGTGATTGTGAAGCGGAAAACAAAAG] [+] EMBL AL692909 [TCCCCCGAGGTATAATGAAGGTCGTTTGTTAGCACAATTACTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGGAACCTCATCGAACGAGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGGTTTGTCCTTGCTTGTAATGTTCATATCACAGTTTTACTCCGACAGACAAGTAAGCTCAATCGGTAGTAGGTAATCGTTATCGCGTTTGTCGCGCGCAGCAATCGACACAACAGAAACAGAAATGGCAATTTTACAGCAAATCAGCGGGCATAGAGGAGGCATGAGCTGCGCATGTGAGTGATTGTGAAGCGGAAAACAAAAG] consensusID : consensus_1586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [CACCCCACGGTACCTGGCAGCTGGAGATTCATAATGAAGGTCGTTTGTTAGCACAAATTACTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGCGAACCTCATCGAACGACGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGAATGCAAATCGACCGCGTACCACTACAAAGGCCGCTGCTATATTCAATGTCCCCCGGGGACGTACCCGTCGGCACCACTTGCCCCGGAAGCGAACGGCACAGCAGCATCCCACCGAGCGGACATCGATGAAATAGCGATCAACGGTCAGCGGCCACTGTCA] [+] EMBL BX620905 [CACCCCACGGTACCTGGCAGCTGGAGATTCATAATGAAGGTCGTTTGTTAGCACAAATTACTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGCGAACCTCATCGAACGACGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGAATGCAAATCGACCGCGTACCACTACAAAGGCCGCTGCTATATTCAATGTCCCCCGGGGACGTACCCGTCGGCACCACTTGCCCCGGAAGCGAACGGCACAGCAGCATCCCACCGAGCGGACATCGATGAAATAGCGATCAACGGTCAGCGGCCACTGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1586#0 -----------------TCCCCCGAGGT--ATAATGAAGGTCGTTTGTTAGCACAA-TTA 40 consensus_1586#1 CACCCCACGGTACCTGGCAGCTGGAGATTCATAATGAAGGTCGTTTGTTAGCACAAATTA 60 * *** * ************************** *** consensus_1586#0 CTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCC 100 consensus_1586#1 CTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCC 120 ************************************************************ consensus_1586#0 GGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGG 160 consensus_1586#1 GGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGG 180 ************************************************************ consensus_1586#0 AATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGAC 220 consensus_1586#1 AATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGAC 240 ************************************************************ consensus_1586#0 ACAGCGAGGTGCAG-GAACCTCATCGAACGA-GTGACGACGGTATCCTGCGCACGGTTTG 278 consensus_1586#1 ACAGCGAGGTGCAGCGAACCTCATCGAACGACGTGACGACGGTATCCTGCGCACGGTTTG 300 ************** **************** **************************** consensus_1586#0 ATGCCGCCAGCTGCATAGGTTTGTCCTTGCTTGTAATGTTCATATCACAGTTTTACTCCG 338 consensus_1586#1 ATGCCGCCAGCTGCATAGAATGCAAATCGACCGCG-TACCACTACAAAGGCC--GCTGCT 357 ****************** * * * * * ** * * ** * consensus_1586#0 ACAGACAAGTAAGCTCAATCGGTAGTAGGTAATCGTTATCGC-GTTTGTCGCGCGCAGCA 397 consensus_1586#1 ATATTCAA----TGTCCCCCGG--GGACGTACCCGTCGGCACCACTTGCCCCG-GAAGCG 410 * * *** ** *** * * *** *** * * *** * ** * *** consensus_1586#0 ATCGACACAACAGAAACAGAAATGGCAATTTTACAGCAAATCAGCGGGCATAGAGGAGGC 457 consensus_1586#1 AACGGCACAGCAGCATCCCACCGAGCGGACAT-CGATGAAATAGCGATCA-ACGGTCAGC 468 * ** **** *** * * * ** * * ** **** ** * * ** consensus_1586#0 ATGAGCTGCGCATGTGAGTGATTGTGAAGCGGAAAACAAAAG 499 consensus_1586#1 GGCCACTGT-CA------------------------------ 479 *** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||