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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[CCGCGGACGCGTGGGGCGCGAAAAGGTCTGTCTGGCCACGGAGTTGCGCTTTTGTTTGTTCTCTTCTTTCATTCCCCTCTTTGCGTAAGTAGTGTAAATGACCCCGAGAGGGGTGCGTGGCTATTCTAACCCCTTCCATGTTGTTACACGATATTTCGGCGTCGGTGTATTAGAGCAGCAGCAGCAGCAGTAGCAGCAAGTGCAGAGTGGCATTTATTTGGTGACGGTAGAATTAACAAACAAAAGAAAAAAGCAAAAGCGCGAAAGCGCAGCAGAATTCGTGGCCGTTCTGATCGTTAGTGTACAAGTGTTTTCCACGTTTCTCCATAAAATCTAATGCCTAGCAAGCGTGGATTGATTTTCAGAGTGCAAAAGTGATCGATAGTGCTACCGTGCCGGGTACTTCCGGGTTGTAAGGGGTTACGGAGCAAGGTGAAAAAGATCGTGTGTGCAAAAGATGTGCAAAAGGGCAAGTGCTAAAGGTGCGCGCGGTGATCGCGGCACTGTTGAGCATGTATGAGTGCGATGTTACTTATGTCTGCAAATTATGTCGAGAGTTGGAGGCGTCTTCCCTGTGTGTGTGTTTTTATCACTTCCACGTGGTGCTCCACATAAGGGGTAGCGTCGGTACGGAAAAAAAACTCAATCAGCTCATTCAATCTCTTAACGAGAGTGCAG]
[+] EMBL BM633971 [CCGCGGACGCGTGGGGCGCGAAAAGGTCTGTCTGGCCACGGAGTTGCGCTTTTGTTTGTTCTCTTCTTTCATTCCCCTCTTTGCGTAAGTAGTGTAAATGACCCCGAGAGGGGTGCGTGGCTATTCTAACCCCTTCCATGTTGTTACACGATATTTCGGCGTCGGTGTATTAGAGCAGCAGCAGCAGCAGTAGCAGCAAGTGCAGAGTGGCATTTATTTGGTGACGGTAGAATTAACAAACAAAAGAAAAAAGCAAAAGCGCGAAAGCGCAGCAGAATTCGTGGCCGTTCTGATCGTTAGTGTACAAGTGTTTTCCACGTTTCTCCATAAAATCTAATGCCTAGCAAGCGTGGATTGATTTTCAGAGTGCAAAAGTGATCGATAGTGCTACCGTGCCGGGTACTTCCGGGTTGTAAGGGGTTACGGAGCAAGGTGAAAAAGATCGTGTGTGCAAAAGATGTGCAAAAGGGCAAGTGCTAAAGGTGCGCGCGGTGATCGCGGCACTGTTGAGCATGTATGAGTGCGATGTTACTTATGTCTGCAAATTATGTCGAGAGTTGGAGGCGTCTTCCCTGTGTGTGTGTTTTTATCACTTCCACGTGGTGCTCCACATAAGGGGTAGCGTCGGTACGGAAAAAAAACTCAATCAGCTCATTCAATCTCTTAACGAGAGTGCAG]
consensusID : consensus_1589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[CCGATTTGGTGACGGTAGAATTAACAAACAAAAGAAAAAAGCAAAAGCGCGAACGCGCAGCAGAATTCGTGGCCGTTCTGATCGTTAGTGTACAAGTGTTTTCCACGTTTCTCCATAACATCTAATGCCTAGCAAATGCGAATCGATTTTCAGTGAGCAAAAGTGATCGATAGTGCTACCCGTGCCGGGTACTTCCGGGATGTAAGGGGTTACGGAGCAAGGTGAAAAAGATCGTGTGTGCAAAAGATGTGCAAAAGGGCAAGTGCTAAAGGTGCGCGCGGTGATCGCGGCACCGTTGAGCATGTATGAGTGCAATGTTACTTATGTCTGCAAATTATGTCGAGGGTTGGAGGCGTCTTCCCTGTATGTGTGTGTTTGTGAGTGATTTGTGGTGATTTGTGAAATTTTAAAAGAAATTTGATTACAAAATGTAACCCATAAGGTCGTTGGACGACCAAGTGACCAAGTGATCGTACAAGTCCATTTCTAAAAAACATCTAATTGTATGCGTGGGACAACATAAGCCAACAGCTACTAGTGACACAGAACGAAAAGCCGGCGCCGTGTAAAAGAAAAATGTTCCACTGATCCGATCGCAGCTCTTCTAATGAACGGGCAATACGTTGA]
[+] EMBL BM636450 [CCGATTTGGTGACGGTAGAATTAACAAACAAAAGAAAAAAGCAAAAGCGCGAACGCGCAGCAGAATTCGTGGCCGTTCTGATCGTTAGTGTACAAGTGTTTTCCACGTTTCTCCATAACATCTAATGCCTAGCAAATGCGAATCGATTTTCAGTGAGCAAAAGTGATCGATAGTGCTACCCGTGCCGGGTACTTCCGGGATGTAAGGGGTTACGGAGCAAGGTGAAAAAGATCGTGTGTGCAAAAGATGTGCAAAAGGGCAAGTGCTAAAGGTGCGCGCGGTGATCGCGGCACCGTTGAGCATGTATGAGTGCAATGTTACTTATGTCTGCAAATTATGTCGAGGGTTGGAGGCGTCTTCCCTGTATGTGTGTGTTTGTGAGTGATTTGTGGTGATTTGTGAAATTTTAAAAGAAATTTGATTACAAAATGTAACCCATAAGGTCGTTGGACGACCAAGTGACCAAGTGATCGTACAAGTCCATTTCTAAAAAACATCTAATTGTATGCGTGGGACAACATAAGCCAACAGCTACTAGTGACACAGAACGAAAAGCCGGCGCCGTGTAAAAGAAAAATGTTCCACTGATCCGATCGCAGCTCTTCTAATGAACGGGCAATACGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1589#0 CCGCGGACGCGTGGGGCGCGAAAAGGTCTGTCTGGCCACGGAGTTGCGCTTTTGTTTGTT 60
consensus_1589#1 ------------------------------------------------------------
consensus_1589#0 CTCTTCTTTCATTCCCCTCTTTGCGTAAGTAGTGTAAATGACCCCGAGAGGGGTGCGTGG 120
consensus_1589#1 ------------------------------------------------------------
consensus_1589#0 CTATTCTAACCCCTTCCATGTTGTTACACGATATTTCGGCGTCGGTGTATTAGAGCAGCA 180
consensus_1589#1 ------------------------------------------------------------
consensus_1589#0 GCAGCAGCAGTAGCAGCAAGTGCAGAGTGGCATTTATTTGGTGACGGTAGAATTAACAAA 240
consensus_1589#1 --------------------------------CCGATTTGGTGACGGTAGAATTAACAAA 28
*************************
consensus_1589#0 CAAAAGAAAAAAGCAAAAGCGCGAAAGCGCAGCAGAATTCGTGGCCGTTCTGATCGTTAG 300
consensus_1589#1 CAAAAGAAAAAAGCAAAAGCGCGAACGCGCAGCAGAATTCGTGGCCGTTCTGATCGTTAG 88
************************* **********************************
consensus_1589#0 TGTACAAGTGTTTTCCACGTTTCTCCATAAAATCTAATGCCTAGCAAGCGTGGATTGATT 360
consensus_1589#1 TGTACAAGTGTTTTCCACGTTTCTCCATAACATCTAATGCCTAGCAAATGCGAATCGATT 148
****************************** **************** * * ** ****
consensus_1589#0 TTCAGAGTGCAAAAGTGATCGATAGTGCTACC-GTGCCGGGTACTTCCGGGTTGTAAGGG 419
consensus_1589#1 TTCAGTGAGCAAAAGTGATCGATAGTGCTACCCGTGCCGGGTACTTCCGGGATGTAAGGG 208
***** * ************************ ****************** ********
consensus_1589#0 GTTACGGAGCAAGGTGAAAAAGATCGTGTGTGCAAAAGATGTGCAAAAGGGCAAGTGCTA 479
consensus_1589#1 GTTACGGAGCAAGGTGAAAAAGATCGTGTGTGCAAAAGATGTGCAAAAGGGCAAGTGCTA 268
************************************************************
consensus_1589#0 AAGGTGCGCGCGGTGATCGCGGCACTGTTGAGCATGTATGAGTGCGATGTTACTTATGTC 539
consensus_1589#1 AAGGTGCGCGCGGTGATCGCGGCACCGTTGAGCATGTATGAGTGCAATGTTACTTATGTC 328
************************* ******************* **************
consensus_1589#0 TGCAAATTATGTCGAGAGTTGGAGGCGTCTTCCCTGTGTGTGTGTTTTTATCACTTCCAC 599
consensus_1589#1 TGCAAATTATGTCGAGGGTTGGAGGCGTCTTCCCTGTATGTGTGTGTTTGTGAGTGATTT 388
**************** ******************** ******* *** * * *
consensus_1589#0 GTGGTGCTCCACATAA----GGGGTAGCGTCGGTACGGAAAAAAAACTCAATCAGCTCAT 655
consensus_1589#1 GTGGTGATTTGTGAAATTTTAAAAGAAATTTGATTACAAAATGTAACCCA-TAAGGTCGT 447
****** * ** * * * * *** *** ** * ** ** *
consensus_1589#0 TCAATCTCTTAACGAGAGTGCAG------------------------------------- 678
consensus_1589#1 TGGACGACCAAGTGACCAAGTGATCGTACAAGTCCATTTCTAAAAAACATCTAATTGTAT 507
* * * * ** *
consensus_1589#0 ------------------------------------------------------------
consensus_1589#1 GCGTGGGACAACATAAGCCAACAGCTACTAGTGACACAGAACGAAAAGCCGGCGCCGTGT 567
consensus_1589#0 ------------------------------------------------------------
consensus_1589#1 AAAAGAAAAATGTTCCACTGATCCGATCGCAGCTCTTCTAATGAACGGGCAATACGTTGA 627
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||