These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [TTGCTGACAAACGGTTNAACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGCTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTGCTGGGATACGGACCAACGGCTTGTCCCCGGCACGATCCCCGTCGTACGCGGGGCAGGTTTGTTGGATGAATCTAATCGTTTCATCCACGGTGTGACGACAGATTTTAGCACCTACGGATCCGTAGATCCCCTGATAAGTGTAAACCTTACCTCGTACACCGACTGGATAACGCGCTTTGTACTGTACCGACCACCGAAGTTGGAGCTTGTGTTCCGTGGTGGTGAGGATGAGTTCGATTTCGGCAGCAGCTGTGTGCTGAAGAATGGCACCACGGGCAACTGCATGCCGGAATATGGTTGCGAGCGCACAATTAATGAGGCGAAAAGTGTGCAAGACATTACGATTTGTGGGTTTGAGGGAACTGTCAGTTATGTTTGCTGCCCTATAGGTCATCAGGATTTTCTACCAATTCCCGAGATAGAGCATCCGTCCGNTGTTAGTTTGTTACGTTCGCTACCGTACGAGAACGTCCGGCTCGTTGCCTTTGAGTGACTGACTAGATTGTAAGTCCGTGCGTACTTT] [+] EMBL BX620202 [TTGCTGACAAACGGTTNAACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGCTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTGCTGGGATACGGACCAACGGCTTGTCCCCGGCACGATCCCCGTCGTACGCGGGGCAGGTTTGTTGGATGAATCTAATCGTTTCATCCACGGTGTGACGACAGATTTTAGCACCTACGGATCCGTAGATCCCCTGATAAGTGTAAACCTTACCTCGTACACCGACTGGATAACGCGCTTTGTACTGTACCGACCACCGAAGTTGGAGCTTGTGTTCCGTGGTGGTGAGGATGAGTTCGATTTCGGCAGCAGCTGTGTGCTGAAGAATGGCACCACGGGCAACTGCATGCCGGAATATGGTTGCGAGCGCACAATTAATGAGGCGAAAAGTGTGCAAGACATTACGATTTGTGGGTTTGAGGGAACTGTCAGTTATGTTTGCTGCCCTATAGGTCATCAGGATTTTCTACCAATTCCCGAGATAGAGCATCCGTCCGNTGTTAGTTTGTTACGTTCGCTACCGTACGAGAACGTCCGGCTCGTTGCCTTTGAGTGACTGACTAGATTGTAAGTCCGTGCGTACTTT] consensusID : consensus_1600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [AGATCCCNNGTTAATGAGCGTAACGTGACACTGCACTGTGCTGTTAGCCGAACCGCTTGAAAACCTGATACCAAACTGCATTCAAGCTTGGTTGCTGACAACGGTTCACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTTGCTTGGGATACGGACCAACGGTTGTCCCCGGCACGATCCCGTCGTACGCGGGCAGGTTGTGGATGAATCTAATCGTTTCATACACGGTGTGACGACAGATTTAGCACCTACGGATCNGTAAATCCCCTTGATAAGTGTAAAACCTTAACCTCGGTACACCGACGTGGATAACGCGCTTTGTACCTGTACCCGACCACCGAAGTTGGAGCTTGNGGTACCGGTGGTGCTGACGGGATGAGTTCGATNCTCGGCNCGCAACGCTGTGGTCCTNGGAAGGAAATGG] [+] EMBL AL692971 [AGATCCCNNGTTAATGAGCGTAACGTGACACTGCACTGTGCTGTTAGCCGAACCGCTTGAAAACCTGATACCAAACTGCATTCAAGCTTGGTTGCTGACAACGGTTCACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTTGCTTGGGATACGGACCAACGGTTGTCCCCGGCACGATCCCGTCGTACGCGGGCAGGTTGTGGATGAATCTAATCGTTTCATACACGGTGTGACGACAGATTTAGCACCTACGGATCNGTAAATCCCCTTGATAAGTGTAAAACCTTAACCTCGGTACACCGACGTGGATAACGCGCTTTGTACCTGTACCCGACCACCGAAGTTGGAGCTTGNGGTACCGGTGGTGCTGACGGGATGAGTTCGATNCTCGGCNCGCAACGCTGTGGTCCTNGGAAGGAAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1600#0 ------------------------------------------------------------ consensus_1600#1 AGATCCCNNGTTAATGAGCGTAACGTGACACTGCACTGTGCTGTTAGCCGAACCGCTTGA 60 consensus_1600#0 -------------------------------TTGCTGACAAACGGTTNAACAGAACGCAG 29 consensus_1600#1 AAACCTGATACCAAACTGCATTCAAGCTTGGTTGCTGACAA-CGGTTCA-CAGAACGCAG 118 ********** ***** * ********** consensus_1600#0 GTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATG 89 consensus_1600#1 GTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATG 178 ************************************************************ consensus_1600#0 TGCAAAGGTCGTATGCTGGACAGCTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGT 149 consensus_1600#1 TGCAAAGGTCGTATGCTGGACAG-TTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGT 237 *********************** ************************************ consensus_1600#0 TCACAATACACGTG--CTGGGATACGGACCAACGGCTTGTCCCCGGCACGATCCCCGTCG 207 consensus_1600#1 TCACAATACACGTTGCTTGGGATACGGACCAACGG-TTGTCCCCGGCACGATCCC-GTCG 295 ************* ****************** ******************* **** consensus_1600#0 TACGCGGGGCAGGTTTGTTGGATGAATCTAATCGTTTCATCCACGGTGTGACGACAGATT 267 consensus_1600#1 TACGCGGG-CAGGTT--GTGGATGAATCTAATCGTTTCATACACGGTGTGACGACAGATT 352 ******** ****** ********************** ******************* consensus_1600#0 TTAGCACCTACGGATCCGTAGATCCCCT-GATAAGTGTAAACCTT--ACCTCG-TACACC 323 consensus_1600#1 T-AGCACCTACGGATCNGTAAATCCCCTTGATAAGTGTAAAACCTTAACCTCGGTACACC 411 * ************** *** ******* ************ * * ****** ****** consensus_1600#0 GAC-TGGATAACGCGCTTTGTAC-TGTACC-GACCACCGAAGTTGGAGCTTGTGTTCC-- 378 consensus_1600#1 GACGTGGATAACGCGCTTTGTACCTGTACCCGACCACCGAAGTTGGAGCTTGNGGTACCG 471 *** ******************* ****** ********************* * * * consensus_1600#0 GTGGTGGTGA--GGATGAGTTCGATT-TCGGCA-GCA--GCTGTGTGCTGAAGAATGGCA 432 consensus_1600#1 GTGGTGCTGACGGGATGAGTTCGATNCTCGGCNCGCAACGCTGTGGTCCTNGGAAGGAAA 531 ****** *** ************* ***** *** ****** * *** * * consensus_1600#0 CCACGGGCAACTGCATGCCGGAATATGGTTGCGAGCGCACAATTAATGAGGCGAAAAGTG 492 consensus_1600#1 TGG--------------------------------------------------------- 534 consensus_1600#0 TGCAAGACATTACGATTTGTGGGTTTGAGGGAACTGTCAGTTATGTTTGCTGCCCTATAG 552 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 GTCATCAGGATTTTCTACCAATTCCCGAGATAGAGCATCCGTCCGNTGTTAGTTTGTTAC 612 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 GTTCGCTACCGTACGAGAACGTCCGGCTCGTTGCCTTTGAGTGACTGACTAGATTGTAAG 672 consensus_1600#1 ------------------------------------------------------------ consensus_1600#0 TCCGTGCGTACTTT 686 consensus_1600#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||