These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CAAGAATCCCCGAGTTAGTATCTAGCCGTCGTACTGTNCTGCTCATATCGCTCATGCTATTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAGCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGTGTAAGAAACCCTGGAAAGATGTTAACGTGTTTATTGGTTGCCGTTGAGTCTGGAAAATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGCGAACGTTTTATTGGCTGAAGGATAGAGAGCGGGAACGGGGGGAGGGGGGATATGCGGTGGGATTGGAAGTTGCCTGTATTCTGTGGCACTTGGNTAGATCGTACCGNTATTGATTGACCAGACTGTTCGGTTAGATATTCGCGCTTTCTGGTTATATCCCAATATNGCCGGGACTGCACTGGACNATCACCTAAANCTTGGTGCCAACNTTATTGTACATGTAAACAAAATTCACACAACCACACACCCACACTACACCAACACACCACACTACACACACANAACTACACAGAGTAATGTCAA] [+] EMBL AL693083 [CAAGAATCCCCGAGTTAGTATCTAGCCGTCGTACTGTNCTGCTCATATCGCTCATGCTATTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAGCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGTGTAAGAAACCCTGGAAAGATGTTAACGTGTTTATTGGTTGCCGTTGAGTCTGGAAAATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGCGAACGTTTTATTGGCTGAAGGATAGAGAGCGGGAACGGGGGGAGGGGGGATATGCGGTGGGATTGGAAGTTGCCTGTATTCTGTGGCACTTGGNTAGATCGTACCGNTATTGATTGACCAGACTGTTCGGTTAGATATTCGCGCTTTCTGGTTATATCCCAATATNGCCGGGACTGCACTGGACNATCACCTAAANCTTGGTGCCAACNTTATTGTACATGTAAACAAAATTCACACAACCACACACCCACACTACACCAACACACCACACTACACACACANAACTACACAGAGTAATGTCAA] consensusID : consensus_1624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [CTAAACCGGCAACCCCGTATCTAGCCGTCGTACTGTTCTGCTCCATATCGCTCATGCTATTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAGCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGTGTAAGAAACCCTGGAAAGATGTTAACGTGTTTTATTGGTTGCGTTTTTGAGTCTGGAAAATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGGAAGTTTTATTGGTGAAGGATAGAGAGCGGGAAGG] [+] EMBL BX613098 [CTAAACCGGCAACCCCGTATCTAGCCGTCGTACTGTTCTGCTCCATATCGCTCATGCTATTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACAGCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACGTGTAAGAAACCCTGGAAAGATGTTAACGTGTTTTATTGGTTGCGTTTTTGAGTCTGGAAAATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGGAAGTTTTATTGGTGAAGGATAGAGAGCGGGAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1624#0 CAAGAATCCCCGAGTTAGTATCTAGCCGTCGTACTGTNCTGCTC-ATATCGCTCATGCTA 59 consensus_1624#1 -CTAAACCGGCAACCCCGTATCTAGCCGTCGTACTGTTCTGCTCCATATCGCTCATGCTA 59 ** * * * ******************** ****** *************** consensus_1624#0 TTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACA 119 consensus_1624#1 TTCTATCTGTCATAACGTCATTTTACCCGATGTTTGTATACCAAACCTATCCTGACAACA 119 ************************************************************ consensus_1624#0 GCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACG 179 consensus_1624#1 GCAACAACAACAAAACAAGCTAAAATCAAAGACTCTACCGTGTAGCTGGTAAGATTAACG 179 ************************************************************ consensus_1624#0 TGTAAGAAACCCTGGAAAGATGTTAACGTGTTT-ATTGGTTGC--CGTTGAGTCTGGAAA 236 consensus_1624#1 TGTAAGAAACCCTGGAAAGATGTTAACGTGTTTTATTGGTTGCGTTTTTGAGTCTGGAAA 239 ********************************* ********* ************* consensus_1624#0 ATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTAGCGAACGTTTTATTGGCTGAAG 296 consensus_1624#1 ATTTATTGCAATTCCCGATCCCTCGCAGGAGAAGGGTA--GGAAGTTTTATTGG-TGAAG 296 ************************************** * * ********** ***** consensus_1624#0 GATAGAGAGCGGGAACGGGGGGAGGGGGGATATGCGGTGGGATTGGAAGTTGCCTGTATT 356 consensus_1624#1 GATAGAGAGCGGGAAGG------------------------------------------- 313 *************** * consensus_1624#0 CTGTGGCACTTGGNTAGATCGTACCGNTATTGATTGACCAGACTGTTCGGTTAGATATTC 416 consensus_1624#1 ------------------------------------------------------------ consensus_1624#0 GCGCTTTCTGGTTATATCCCAATATNGCCGGGACTGCACTGGACNATCACCTAAANCTTG 476 consensus_1624#1 ------------------------------------------------------------ consensus_1624#0 GTGCCAACNTTATTGTACATGTAAACAAAATTCACACAACCACACACCCACACTACACCA 536 consensus_1624#1 ------------------------------------------------------------ consensus_1624#0 ACACACCACACTACACACACANAACTACACAGAGTAATGTCAA 579 consensus_1624#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||