These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GAGTGGTATTTCGAGAGCATTCGCGCGCACATTAAATCTTGTGGCTGGCAAGACTTTGTGCGGTGTGGAAGCTTCTCATTGCTAATGCAAGCGCTCAAAGGTTCAAGCACCGGTCAGTGAAAGCACCCGTCATCGCAAACGTCATAAGGCCTTTTTCGTTGCAATGTCCTGATAATCAGTGTGATGTCCTTTAATAGTCTGTATGCTAACCAAACTAGAACATCTCCATTGGCTTGATGGAAGATTTTTATTTCCAACTGCAGTAAATGATTTTCATACAAACAACATTCTCTTCTGCACCGAAACATGTAAGTATGTGTCTTTAGGATAAAGTTGCAATAATTTTTAAAGAAAAACTCAAACCACCAAATAAGAGTTTAGTAGAAACAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAATTTCTACNAGCAGCATGTTATTTGGGAACCTAAAAACAAACCA] [+] EMBL BX625381 [GAGTGGTATTTCGAGAGCATTCGCGCGCACATTAAATCTTGTGGCTGGCAAGACTTTGTGCGGTGTGGAAGCTTCTCATTGCTAATGCAAGCGCTCAAAGGTTCAAGCACCGGTCAGTGAAAGCACCCGTCATCGCAAACGTCATAAGGCCTTTTTCGTTGCAATGTCCTGATAATCAGTGTGATGTCCTTTAATAGTCTGTATGCTAACCAAACTAGAACATCTCCATTGGCTTGATGGAAGATTTTTATTTCCAACTGCAGTAAATGATTTTCATACAAACAACATTCTCTTCTGCACCGAAACATGTAAGTATGTGTCTTTAGGATAAAGTTGCAATAATTTTTAAAGAAAAACTCAAACCACCAAATAAGAGTTTAGTAGAAACAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAATTTCTACNAGCAGCATGTTATTTGGGAACCTAAAAACAAACCA] consensusID : consensus_1660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [CCGCTGCACTGGCATCAAGAAGGGATAAGCCAACGAAACGAATGGAAAGATTACAAAGAATGTGCGCGATGCGTGTGAGTGGAGCAAATGAATGAAGAGCAAACGACATTAAGAGAATATCCGGACATTTAACTGGCAAAATTTACTGAAAAAAAACAATACAAATTACGCTACACAAAACAAAACAGCTGATAGAGTGAACCTTTCCTCGAACGCTACTGGCCCTAACACATTCGTGTTGCCAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAAT] [+] EMBL BM576134 [CCGCTGCACTGGCATCAAGAAGGGATAAGCCAACGAAACGAATGGAAAGATTACAAAGAATGTGCGCGATGCGTGTGAGTGGAGCAAATGAATGAAGAGCAAACGACATTAAGAGAATATCCGGACATTTAACTGGCAAAATTTACTGAAAAAAAACAATACAAATTACGCTACACAAAACAAAACAGCTGATAGAGTGAACCTTTCCTCGAACGCTACTGGCCCTAACACATTCGTGTTGCCAAACCTATTGCGCTATTGTACATATATTCTTGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAGCTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAGAAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACAAATGGTATAAAATAAAGAATTTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1660#0 GAGTGGTATTTCGAGAGCATTCGCGCGCACATTAAATCTTGTGGCTGGCAAGACTTTGTG 60 consensus_1660#1 ------------------------------------------------------------ consensus_1660#0 CGGTGTGGAAGCTTCTCATTGCTAATGCAAGCGCTCAAAGGTTCAAGCACCGGTCAGTGA 120 consensus_1660#1 ------------------------------------------------------------ consensus_1660#0 AAGCACCCGTCATCGCAAACGTCAT-AAGGCCTTTTTCGTTGCAATGTCCTGATAATCAG 179 consensus_1660#1 ------CCGCTG-CACTGGCATCAAGAAGGGATAAGCCAACGAAACGAATGGAAAGATTA 53 *** * * * *** **** * * * ** * ** * consensus_1660#0 TGTGATGTCCTTTAATAGTCTGTATGCTAACCAAACTAGAACATCTCCATTGGC-TTGAT 238 consensus_1660#1 CAAAGAATGTGCGCGATGCGTGTGAGTGGAGCAAATGAATGAAGAGCAAACGACATTAAG 113 * * *** * * **** * * * * * * ** * consensus_1660#0 GGAAGATTTTTATTTCCAACTGCAGTAAATGATTTTCATACAAACAACATTCTCTTCTGC 298 consensus_1660#1 AGAATATCCGGACATTTAACTG--GCAAA--ATTTACTGAAAAAAAACAATACAAATTAC 169 *** ** * * ***** * *** **** * * *** **** * * * consensus_1660#0 ACCGAAACATGTAAGTATGTGTCTTTAGGATAAAGTTGCAATAATTTTTAAAGAAAAACT 358 consensus_1660#1 GCT---ACACAAAACAAAACAGCT----GATAGAGTG--AACCTTTCCTCGAACGCTACT 220 * *** ** * ** **** *** ** ** * * *** consensus_1660#0 CAAACCACCAAATAAGAGTTTAGTAGAAACAAACCTATTGCGCTATTGTACATATATTCT 418 consensus_1660#1 GGCCCTAACACATTCGTGTT-------GCCAAACCTATTGCGCTATTGTACATATATTCT 273 * * ** ** * *** ******************************* consensus_1660#0 TGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAG 478 consensus_1660#1 TGACGTCTTTAAAAAAACAAAACCATTGATTCGCATCTAAAAATAGCATACCAAGGCGAG 333 ************************************************************ consensus_1660#0 CTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAG 538 consensus_1660#1 CTAATCCTAGCAAACTCAAACCAATGATTGACGGGGAGGTGAAAAGCGAACAAAGGAAAG 393 ************************************************************ consensus_1660#0 AAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACA 598 consensus_1660#1 AAGAAACTAACCTATCAAAGCAAAGTTTCCAAATCTCTAAACCAATCTAAACCAAAAACA 453 ************************************************************ consensus_1660#0 AATGGTATAAAATAAAGAATTTAATTTCTACNAGCAGCATGTTATTTGGGAACCTAAAAA 658 consensus_1660#1 AATGGTATAAAATAAAGAATTTAAT----------------------------------- 478 ************************* consensus_1660#0 CAAACCA 665 consensus_1660#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||