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Anopheles gambiae
cluster # 1674 cluster # 1674       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1674#0 length = 937 sequences # 1  
consensus_1674#1 length = 691 sequences # 1  

consensusID : consensus_1674#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 937
fasta sequence
                              [TACGCAATTTTTTTTTTTGTTAGATCTTATACCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGATTACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGTTTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTCCTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGTTCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACGAGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACAAGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATGCCAGCGG]

[+] EMBL CNS08IXB             [TACGCAATTTTTTTTTTTGTTAGATCTTATACCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGATTACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGTTTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTCCTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGTTCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACGAGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACAAGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATGCCAGCGG]


>consensus_1674#0 TACGCAATTTTTTTTTTTGTTAGATCTTATACCTCAAAAAGCAATGTTATGAAATAGTAT TTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTT TTCGTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTG TTTTGTTCGTACGCAAAAGCACTAAACCGATTACAGCGTGCACCGAGCGGAAGTAAACAC ACCGCCTCCGATTACAACGATGTTGCGCTGTTTGAATGCCGTTCCTTGGTGCGGAACTTC AGCATCGATGCAAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTG TACCATATGAAGAAAATAATAAAAGCTTCCGGTACGTGCTGGGCGAAAGTGTCGAAGGGC CCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGATGCGGAGGGAA AGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTA CGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGA CCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAACTGGAGGGATGCCTTTCTAGAGC TGAAAGGCGAGCACGTGAGTACGGTGTGTCCTATCCCGGGCGATGCGATTGCGGTGGACA CGGTGGAGAGAGCGCGAGAGGTTATTAAGTTCCTTAGCTTGGAGAATATAATTCCCGACA CGCTAGTATGCGTGAAAGCACGCTGGAACGAGGACAAACGGGAGCTCTTTATACCACTGG TGGACGTGGAGGATCGGGCGATCGGTTACAAGACGCTCCACGTGGGTTCCGATGGAGAAG TATTTGAACGTACCGTGCCAGAAACGAATGCCAGCGG



consensusID : consensus_1674#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATACCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGATTACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGTTCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAAGCTGAGGGATGCCTTTCTCGAGCT]

[+] EMBL BM606834             [CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATACCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGATTACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGTTCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAAGCTGAGGGATGCCTTTCTCGAGCT]


>consensus_1674#1 CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATA CCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATA TTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGAT GTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGAT TACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGT TCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATG GACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCG GTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGT GTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAA TTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGT GGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGT TGCGCAAGCTGAGGGATGCCTTTCTCGAGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1674#0      -----------------------------TACGCAATTTTTTTTTTTGTTAGATCTTATA 31
consensus_1674#1      CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATA 60
                                                   *  * *  *  ********************

consensus_1674#0      CCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATA 91
consensus_1674#1      CCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATA 120
                      ******* ****************************************************

consensus_1674#0      TTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGAT 151
consensus_1674#1      TTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGAT 180
                      ******************************** ***************************

consensus_1674#0      GTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGAT 211
consensus_1674#1      GTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGAT 240
                      ************************************************** * *******

consensus_1674#0      TACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGT 271
consensus_1674#1      TACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGT 300
                      ******************  ************ ************************ **

consensus_1674#0      TTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATG 331
consensus_1674#1      TCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATG 360
                      * ************************************** *******************

consensus_1674#0      GACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCG 391
consensus_1674#1      GACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCG 420
                      ************************************************************

consensus_1674#0      GTACG-TGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGT 450
consensus_1674#1      GTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGT 480
                      ***** ******************************************************

consensus_1674#0      GTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAA 510
consensus_1674#1      GTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAA 540
                      ****************** *****************************************

consensus_1674#0      TTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGT 570
consensus_1674#1      TTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGT 600
                      ************************************************************

consensus_1674#0      GGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGT 630
consensus_1674#1      GGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGT 660
                      ************************************************************

consensus_1674#0      TGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTC 690
consensus_1674#1      TGCGCAAGCTGAGGGATGCCTTTCTCGAGCT----------------------------- 691
                      *******   *************** *****                             

consensus_1674#0      CTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGT 750
consensus_1674#1      ------------------------------------------------------------
                                                                                  

consensus_1674#0      TCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACG 810
consensus_1674#1      ------------------------------------------------------------
                                                                                  

consensus_1674#0      AGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACA 870
consensus_1674#1      ------------------------------------------------------------
                                                                                  

consensus_1674#0      AGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATG 930
consensus_1674#1      ------------------------------------------------------------
                                                                                  

consensus_1674#0      CCAGCGG 937
consensus_1674#1      -------
                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)