These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence [TACGCAATTTTTTTTTTTGTTAGATCTTATACCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGATTACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGTTTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTCCTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGTTCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACGAGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACAAGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATGCCAGCGG] [+] EMBL CNS08IXB [TACGCAATTTTTTTTTTTGTTAGATCTTATACCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGATTACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGTTTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTCCTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGTTCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACGAGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACAAGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATGCCAGCGG] consensusID : consensus_1674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATACCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGATTACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGTTCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAAGCTGAGGGATGCCTTTCTCGAGCT] [+] EMBL BM606834 [CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATACCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGATTACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGTTCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAAGCTGAGGGATGCCTTTCTCGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1674#0 -----------------------------TACGCAATTTTTTTTTTTGTTAGATCTTATA 31 consensus_1674#1 CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATA 60 * * * * ******************** consensus_1674#0 CCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATA 91 consensus_1674#1 CCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATA 120 ******* **************************************************** consensus_1674#0 TTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGAT 151 consensus_1674#1 TTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGAT 180 ******************************** *************************** consensus_1674#0 GTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGAT 211 consensus_1674#1 GTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGAT 240 ************************************************** * ******* consensus_1674#0 TACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGT 271 consensus_1674#1 TACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGT 300 ****************** ************ ************************ ** consensus_1674#0 TTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATG 331 consensus_1674#1 TCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATG 360 * ************************************** ******************* consensus_1674#0 GACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCG 391 consensus_1674#1 GACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCG 420 ************************************************************ consensus_1674#0 GTACG-TGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGT 450 consensus_1674#1 GTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGT 480 ***** ****************************************************** consensus_1674#0 GTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAA 510 consensus_1674#1 GTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAA 540 ****************** ***************************************** consensus_1674#0 TTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGT 570 consensus_1674#1 TTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGT 600 ************************************************************ consensus_1674#0 GGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGT 630 consensus_1674#1 GGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGT 660 ************************************************************ consensus_1674#0 TGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTC 690 consensus_1674#1 TGCGCAAGCTGAGGGATGCCTTTCTCGAGCT----------------------------- 691 ******* *************** ***** consensus_1674#0 CTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGT 750 consensus_1674#1 ------------------------------------------------------------ consensus_1674#0 TCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACG 810 consensus_1674#1 ------------------------------------------------------------ consensus_1674#0 AGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACA 870 consensus_1674#1 ------------------------------------------------------------ consensus_1674#0 AGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATG 930 consensus_1674#1 ------------------------------------------------------------ consensus_1674#0 CCAGCGG 937 consensus_1674#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||