These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence [GATCCCCCGGTTTTTTTTNTTCTTNTATNAACCAGAGNTACACATCGGCGTAATCACAAGCTCTTGGAATTAATTGGCCACGTCATACACGATAAGGAAACCCTACTTTAATAAAGCTAATACTATTAATTCGACCCAAGAACATTGCCCTCCGGTTCGGACGACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATAAAACTCTAATGTACGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTTCACCAGTGATATTGACATTGAACCAATGCATAGTGATCAGAGCACCTAAAACCCACTTAGTCTCGGGAAATATTATTTCAAAAACAGAACTAAGACCGGGTTGTNAATGGCAGGCCAGGANAATGAAACATTAATCTTNTAGGTACTGGATTCANGTCTTTCTCCGAGGTTACGGCCAGTTTCCGGAGTTAGNGTTAAATATCTGAATATCGGTGGAACAGTTNCATATTGTTCTTAAACCCAGGTACCAAATTTTCTTCCCATTCCTCTTCATTCCAANTGAACAANNTAATTAAGCATATTTCTCCTTTCCAACAAAGTGGGTTCAACCGGTCACCTACACAACACAGGACACTTACCAATTGGAACCCGGACACATNCTCTTCCCTTCAGCACACCCAACACTCGGCCACCTTGGAAACTAACANGTACCATCTANAATCTACCCACACANNACTTGGGCAGCCTAAAACTTCCCCAACATTCCAGCAAAACTCCANTCTCCTGTCCAANTTCACACAGGTCCATTACTTNTCAGGGCCCTGGCTCACACACCCTCTCNCACCACACACAGCACACACACAGCACACACACAANCACAACACAANCAAC] [+] EMBL AL694592 [GATCCCCCGGTTTTTTTTNTTCTTNTATNAACCAGAGNTACACATCGGCGTAATCACAAGCTCTTGGAATTAATTGGCCACGTCATACACGATAAGGAAACCCTACTTTAATAAAGCTAATACTATTAATTCGACCCAAGAACATTGCCCTCCGGTTCGGACGACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATAAAACTCTAATGTACGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTTCACCAGTGATATTGACATTGAACCAATGCATAGTGATCAGAGCACCTAAAACCCACTTAGTCTCGGGAAATATTATTTCAAAAACAGAACTAAGACCGGGTTGTNAATGGCAGGCCAGGANAATGAAACATTAATCTTNTAGGTACTGGATTCANGTCTTTCTCCGAGGTTACGGCCAGTTTCCGGAGTTAGNGTTAAATATCTGAATATCGGTGGAACAGTTNCATATTGTTCTTAAACCCAGGTACCAAATTTTCTTCCCATTCCTCTTCATTCCAANTGAACAANNTAATTAAGCATATTTCTCCTTTCCAACAAAGTGGGTTCAACCGGTCACCTACACAACACAGGACACTTACCAATTGGAACCCGGACACATNCTCTTCCCTTCAGCACACCCAACACTCGGCCACCTTGGAAACTAACANGTACCATCTANAATCTACCCACACANNACTTGGGCAGCCTAAAACTTCCCCAACATTCCAGCAAAACTCCANTCTCCTGTCCAANTTCACACAGGTCCATTACTTNTCAGGGCCCTGGCTCACACACCCTCTCNCACCACACACAGCACACACACAGCACACACACAANCACAACACAANCAAC] consensusID : consensus_1676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [ACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATNTAAACTCTAATGTACGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTCACCAGTGATATTGAAATTGAAACCAATGATAGTGATAGAGCACTAAACCACTTTGTTTTGGCGAAATATATTCAAAACAGACTAGCCGGGTTGTAAATGCAGCAGAAAATGAAACATAATCTTTAGTACTGATTCAGTCTTTCTCCGAGTTACGCCAGTTCGAGTTAGGTTAATTTTTATTTGTGACAGTTCATATGTCTAACCAGTACAATTTTCTCCATCTCTTATCAAATGAAAATAATTAGCATATTTTCTTCAAAAGTGTTACGTCACTAAAAAGACATACATGACCGAATTTTCTACACCATTGCATTGAATAAGTAATTAATTACACAAATGAACTAAATTCAATCAAAAATCATTCTTAATAAAGTATATTTTGGCTGTAAAACTTAAAAAAANAAAAAAAAAAACCAGGCATGTGCGCCTCGGGGCGATTCT] [-] EMBL AL693455 [ACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATNTAAACTCTAATGTACGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTCACCAGTGATATTGAAATTGAAACCAATGATAGTGATAGAGCACTAAACCACTTTGTTTTGGCGAAATATATTCAAAACAGACTAGCCGGGTTGTAAATGCAGCAGAAAATGAAACATAATCTTTAGTACTGATTCAGTCTTTCTCCGAGTTACGCCAGTTCGAGTTAGGTTAATTTTTATTTGTGACAGTTCATATGTCTAACCAGTACAATTTTCTCCATCTCTTATCAAATGAAAATAATTAGCATATTTTCTTCAAAAGTGTTACGTCACTAAAAAGACATACATGACCGAATTTTCTACACCATTGCATTGAATAAGTAATTAATTACACAAATGAACTAAATTCAATCAAAAATCATTCTTAATAAAGTATATTTTGGCTGTAAAACTTAAAAAAANAAAAAAAAAAACCAGGCATGTGCGCCTCGGGGCGATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1676#0 GATCCCCCGGTTTTTTTTNTTCTTNTATNAACCAGAGNTACACATCGGCGTAATCACAAG 60 consensus_1676#1 ------------------------------------------------------------ consensus_1676#0 CTCTTGGAATTAATTGGCCACGTCATACACGATAAGGAAACCCTACTTTAATAAAGCTAA 120 consensus_1676#1 ------------------------------------------------------------ consensus_1676#0 TACTATTAATTCGACCCAAGAACATTGCCCTCCGGTTCGGACGACAAGAACTTATGCTAC 180 consensus_1676#1 -------------------------------------------ACAAGAACTTATGCTAC 17 ***************** consensus_1676#0 ACTGAACAAAGGATTCCGCGATGTCAATA-AAACTCTAATGTACGGTTTTAGAATGATGC 239 consensus_1676#1 ACTGAACAAAGGATTCCGCGATGTCAATNTAAACTCTAATGTACGGTTTTAGAATGATGC 77 **************************** ****************************** consensus_1676#0 ATGATCACGATCAGTTCAAAGAAACTTTTCACCAGTGATATTGACATTGAA-CCAATGCA 298 consensus_1676#1 ATGATCACGATCAGTTCAAAGAAACTTT-CACCAGTGATATTGAAATTGAAACCAATG-A 135 **************************** *************** ****** ****** * consensus_1676#0 TAGTGATCAGAGCACCTAAAACCCACTTAGTCTCGGGAAATATTATTTCAAAAACAGAAC 358 consensus_1676#1 TAGTGAT-AGAGCACTAAA---CCACTTTGTTTTGGCGAAA--TATATTCAAAACAGA-C 188 ******* ******* ** ****** ** * ** ** *** * ******** * consensus_1676#0 TAAGACCGGGTTGTNAATGGCAGGCCAGGANAATGAAACATTAATCTTNTAGGTACTGGA 418 consensus_1676#1 TA--GCCGGGTTGTAAATG-CAGC---AGAAAATGAAACAT-AATCTTT--AGTACTG-A 238 ** ********* **** *** ** ********** ****** ****** * consensus_1676#0 TTCANGTCTTTCTCCGAGGTTACGGCCAGTTTCCGGAGTTAGNGTTAAATATCTGAATAT 478 consensus_1676#1 TTCAG-TCTTTCTCCGAG-TTACG-CCAGTTC---GAGTTAGG-TTAATTTT-----TAT 286 **** ************ ***** ****** ******* **** * * *** consensus_1676#0 CGGTGGAACAGTTNCATATTGTTCTTAAACCCAGGTACCAAATTTTCTTCCCATTCCTCT 538 consensus_1676#1 TTGTG--ACAGTTC-ATATGTCT----AACC--AGTAC--AATTTTCT--CCATCTCT-- 331 *** ****** **** * **** **** ******** **** ** consensus_1676#0 TCATTCCAANTGAACAANNTAATTAAGCATATTTCTCCTTTCCAACAAAGTGGGTTCAAC 598 consensus_1676#1 ---TATCAAATG---AAAATAATTA-GCATATTT----TCTTCAA--AAGTG----TTAC 374 * *** ** ** ****** ******** * * *** ***** ** consensus_1676#0 CGGTCACCTACACAACACAGGACACTTACCAATTGGAACCCGGACACATNCTCTTCCCTT 658 consensus_1676#1 --GTCACTAAAAAGACATACA--------TGACCGAATTTTCTACACCATTGCATTGAAT 424 ***** * * *** * * * * **** * * * consensus_1676#0 CAGCACACCCAACACTCGGCCACCTTGGAAACTAACANGTACCATCTANAATCTACCCAC 718 consensus_1676#1 AAGTA-ATTAATTACACAAATGAACTAAATTCAATCAAAAATCATTCTTAAT------AA 477 ** * * * ** * * * * * ** * *** *** * consensus_1676#0 ACANNACTTGGGCAGCCTAAAACTTCCCCAACATTCCAGCAAAACTCCANTCTCCTGTCC 778 consensus_1676#1 AGTATATTTTGGCTG--TAAAACTTA--AAAAAANAAAAAAAAAAACCAGGCA--TGTGC 531 * * ** *** * ******** ** * * **** *** * *** * consensus_1676#0 AANTTCACACAGGTCCATTACTTNTCAGGGCCCTGGCTCACACACCCTCTCNCACCACAC 838 consensus_1676#1 GCCTCGGGGCGATTCT-------------------------------------------- 547 * * ** consensus_1676#0 ACAGCACACACACAGCACACACACAANCACAACACAANCAAC 880 consensus_1676#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||