These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGCACGAAGTGCTTGCTTTATATTATTGCTTGCTTGCAATATTCTACTGACAAGAGAAGTAAAAACGTCGCCTAAGATCGACAATGCTGCGGCGATAGAGTTTTACGCGTTTATTGGTTTAGCACCTAAGCCAAGTGTTTGACAAACTTTTGGAAGTTGAATTTCATTTAAATGAAAGATTCGACTTTTTTTTATTGATAGGAATATTGATGAGACATTGGGAAAAGCAGCACGGTAACAAAAGATAATTATTACTATGCCAAATGAACGGCTGAACGGTTGAGTTTGATCAAGTTTTTTAATATTAATATTTTCTAAAATGACATACTTGCCAGGTTTTGAACTCTAAGTGCTGTTAAGTAGATTTAAAATTAAATGTTCAAGTAATTTCAGTAATTTTAGTAATGCAATAATTTCAGTATACACAATACAGGTCAGATCGAATTTTGCTAGGTTAAATGTTTTGACGAGAACTCTACGATTAGCGATGTCAATTTACAAGCATTTTTCCTACGGATACATATATTTTTATATAGTGGATCAATGAATTGTTTCTTTTAAATTT] [+] EMBL BM603550 [CCGCACGAAGTGCTTGCTTTATATTATTGCTTGCTTGCAATATTCTACTGACAAGAGAAGTAAAAACGTCGCCTAAGATCGACAATGCTGCGGCGATAGAGTTTTACGCGTTTATTGGTTTAGCACCTAAGCCAAGTGTTTGACAAACTTTTGGAAGTTGAATTTCATTTAAATGAAAGATTCGACTTTTTTTTATTGATAGGAATATTGATGAGACATTGGGAAAAGCAGCACGGTAACAAAAGATAATTATTACTATGCCAAATGAACGGCTGAACGGTTGAGTTTGATCAAGTTTTTTAATATTAATATTTTCTAAAATGACATACTTGCCAGGTTTTGAACTCTAAGTGCTGTTAAGTAGATTTAAAATTAAATGTTCAAGTAATTTCAGTAATTTTAGTAATGCAATAATTTCAGTATACACAATACAGGTCAGATCGAATTTTGCTAGGTTAAATGTTTTGACGAGAACTCTACGATTAGCGATGTCAATTTACAAGCATTTTTCCTACGGATACATATATTTTTATATAGTGGATCAATGAATTGTTTCTTTTAAATTT] consensusID : consensus_1677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [CCGCCCACGCGTCCGGTTTGATCAAGTTTTTTAATATTAATATTTTCTAAAATGACATACTTGCCAGGTTTTGAACTCTAAGTGCTGTTAAGTAGATTTAAAATTAAATGTCCAAGTAATTTCAGTAATTTTAGTAATGCAATAATTTCAATATACGCAATACAGGTCAGATAGAATTTTGCTAGGTTATATGTCTTAGCGAGAACTCTACGATTAGCGATGTCAATTTACAAGCATATTTCATACGGATACATATATTTTTTTATACAGTGGATCAATGAATTGTTTCTTTTAAATTTATTGCTTAGAGTGTTTGGACCTATTGGCCTAATTTACCTGTTTTAATCAGAAAATTAAATCTGATCTT] [+] EMBL BM576169 [CCGCCCACGCGTCCGGTTTGATCAAGTTTTTTAATATTAATATTTTCTAAAATGACATACTTGCCAGGTTTTGAACTCTAAGTGCTGTTAAGTAGATTTAAAATTAAATGTCCAAGTAATTTCAGTAATTTTAGTAATGCAATAATTTCAATATACGCAATACAGGTCAGATAGAATTTTGCTAGGTTATATGTCTTAGCGAGAACTCTACGATTAGCGATGTCAATTTACAAGCATATTTCATACGGATACATATATTTTTTTATACAGTGGATCAATGAATTGTTTCTTTTAAATTTATTGCTTAGAGTGTTTGGACCTATTGGCCTAATTTACCTGTTTTAATCAGAAAATTAAATCTGATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1677#0 CCGCACGAAGTGCTTGCTTTATATTATTGCTTGCTTGCAATATTCTACTGACAAGAGAAG 60 consensus_1677#1 ------------------------------------------------------------ consensus_1677#0 TAAAAACGTCGCCTAAGATCGACAATGCTGCGGCGATAGAGTTTTACGCGTTTATTGGTT 120 consensus_1677#1 ------------------------------------------------------------ consensus_1677#0 TAGCACCTAAGCCAAGTGTTTGACAAACTTTTGGAAGTTGAATTTCATTTAAATGAAAGA 180 consensus_1677#1 ------------------------------------------------------------ consensus_1677#0 TTCGACTTTTTTTTATTGATAGGAATATTGATGAGACATTGGGAAAAGCAGCACGGTAAC 240 consensus_1677#1 ------------------------------------------------------------ consensus_1677#0 AAAAGATAATTATTACTATGCCAAATGAACGGCTGAACGGTTGAGTTTGATCAAGTTTTT 300 consensus_1677#1 -----------------------------CCGCCCACGCGTCCGGTTTGATCAAGTTTTT 31 * ** * ** **************** consensus_1677#0 TAATATTAATATTTTCTAAAATGACATACTTGCCAGGTTTTGAACTCTAAGTGCTGTTAA 360 consensus_1677#1 TAATATTAATATTTTCTAAAATGACATACTTGCCAGGTTTTGAACTCTAAGTGCTGTTAA 91 ************************************************************ consensus_1677#0 GTAGATTTAAAATTAAATGTTCAAGTAATTTCAGTAATTTTAGTAATGCAATAATTTCAG 420 consensus_1677#1 GTAGATTTAAAATTAAATGTCCAAGTAATTTCAGTAATTTTAGTAATGCAATAATTTCAA 151 ******************** ************************************** consensus_1677#0 TATACACAATACAGGTCAGATCGAATTTTGCTAGGTTAAATGTTTTGACGAGAACTCTAC 480 consensus_1677#1 TATACGCAATACAGGTCAGATAGAATTTTGCTAGGTTATATGTCTTAGCGAGAACTCTAC 211 ***** *************** **************** **** ** ************ consensus_1677#0 GATTAGCGATGTCAATTTACAAGCATTTTTCCTACGGATACATATATTTTT--ATATAGT 538 consensus_1677#1 GATTAGCGATGTCAATTTACAAGCATATTTCATACGGATACATATATTTTTTTATACAGT 271 ************************** **** ******************* *** *** consensus_1677#0 GGATCAATGAATTGTTTCTTTTAAATTT-------------------------------- 566 consensus_1677#1 GGATCAATGAATTGTTTCTTTTAAATTTATTGCTTAGAGTGTTTGGACCTATTGGCCTAA 331 **************************** consensus_1677#0 ------------------------------------ consensus_1677#1 TTTACCTGTTTTAATCAGAAAATTAAATCTGATCTT 367 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||