These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CCGGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACGCAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTAAGTGATCGAGCGACGATCGGTTGGCGGGTTTTGTTTTGACTTGGGCCCGATCGGTTGGCGTCGGTGTTTGTTACCCAGTTCCGAGCGACTCCGCAAAGGTTAGCAGCGTGCTAGTAGTGTTTGCGGGCTGCGTACGAGTGGTTCTCTCGGTCAGGTGGGACACGACGGTTGTGCCGTTTTTGCGGTTTCTCAGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATACAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGAAACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGTTTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGCCTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCCAATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGCCCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTG] [+] EMBL BM606494 [CCGGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACGCAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTAAGTGATCGAGCGACGATCGGTTGGCGGGTTTTGTTTTGACTTGGGCCCGATCGGTTGGCGTCGGTGTTTGTTACCCAGTTCCGAGCGACTCCGCAAAGGTTAGCAGCGTGCTAGTAGTGTTTGCGGGCTGCGTACGAGTGGTTCTCTCGGTCAGGTGGGACACGACGGTTGTGCCGTTTTTGCGGTTTCTCAGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATACAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGAAACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGTTTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGCCTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCCAATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGCCCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTG] consensusID : consensus_1697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CCGTGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACGCAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATACAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGAAACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGTTTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGCCTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCCAATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGCCCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTGTTGATTCTGGGAAACGCGGCACGTCAACCAGCGCACTCCCAGCCCTTTCAAACGCCAAGCAGGCGGTATGTGACCAGTGGTGAAGTGGGCACAGGTGTATCAAGA] [+] EMBL BM639623 [CCGTGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACGCAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATACAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGAAACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGTTTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGCCTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCCAATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGCCCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTGTTGATTCTGGGAAACGCGGCACGTCAACCAGCGCACTCCCAGCCCTTTCAAACGCCAAGCAGGCGGTATGTGACCAGTGGTGAAGTGGGCACAGGTGTATCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1697#0 CCGGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACG 60 consensus_1697#1 ------------------------------------------------------------ consensus_1697#0 CAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTAAGTGATCGAGC 120 consensus_1697#1 ------------------------------------------------------------ consensus_1697#0 GACGATCGGTTGGCGGGTTTTGTTTTGACTTGGGCCCGATCGGTTGGCGTCGGTGTTTGT 180 consensus_1697#1 ------------------------------------------------------------ consensus_1697#0 TACCCAGTTCCGAGCGACTCCGCAAAGGTTAGCAGCGTGCTAGTAGTGTTTGCGGGCTGC 240 consensus_1697#1 ---------CCGTGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGC 51 *** **** * *** * * * **** * * * ** * * ** consensus_1697#0 GTACGAGTGGTTCTCTCGGTCAGGTGGGACACGACGGTTGTGCCGTTTTTGCGGTTTCTC 300 consensus_1697#1 TCACAAAACG--CAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGA----TC 105 ** * * * * * ** * * *** ****** ** consensus_1697#0 AGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATA 360 consensus_1697#1 GGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATA 165 *********************************************************** consensus_1697#0 CAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGA 420 consensus_1697#1 CAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGA 225 ************************************************************ consensus_1697#0 AACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGT 480 consensus_1697#1 AACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGT 285 ************************************************************ consensus_1697#0 TTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGC 540 consensus_1697#1 TTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGC 345 ************************************************************ consensus_1697#0 CTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCC 600 consensus_1697#1 CTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCC 405 ************************************************************ consensus_1697#0 AATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGC 660 consensus_1697#1 AATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGC 465 ************************************************************ consensus_1697#0 CCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTG----------------------- 697 consensus_1697#1 CCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTGTTGATTCTGGGAAACGCGGCACG 525 ************************************* consensus_1697#0 ------------------------------------------------------------ consensus_1697#1 TCAACCAGCGCACTCCCAGCCCTTTCAAACGCCAAGCAGGCGGTATGTGACCAGTGGTGA 585 consensus_1697#0 ---------------------- consensus_1697#1 AGTGGGCACAGGTGTATCAAGA 607 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||