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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[CCGGTTTCGACGGCTTACAGAATGGTTAAGTGGCATCTTACTGGGTACCGGCGGTGGATTAGTAGTCCGACCGGTTCCGTACTACTGCTAGTGTTATTGGCTCTCGTTGGTGATTACTCCTCACGAGGTGTATTTGCAGCCAGCCCTCTACCCGACCAAAGTGATGTGCTCTACCACGCCGCCAGTGTGTCCTCGATCGCCGCTACGCGGGACGTAGACAGCACTTACTTCCTGCCGAATACAACCGTCCCAACGCACTACTCAATATCGCTGCGCACCGATATCCACAACGATGTGCGAACGTTCAGTGCAATCACGCGCATCTATCTGACCGTGCTGGCACCTACCGATCTGATCGTAATGCATGTGCAGGAGCTCAACATCGCAAGTGTGGCCCTGTATCGGATTGCTTCTACCGGGGGCAATGAAATCTGGATCGATTCACCGACGTACATGATCGATATCGTCCGGGAGCACGTTACGTTCCGCACGGCCGGCATGCTGCCGCTCGGCAATTACGCGCTAGAGGTCGCGTACACTGGTTCGATGCGCAACTACCAGAGCGGTTACCTGGTGTCGCGCTATCGAAACGAGGCGAACGAGTGGCGCTCGGTGGGAACGACCCACTTCCAGGCGACGCTTGCCCG]
[+] EMBL BM576200 [CCGGTTTCGACGGCTTACAGAATGGTTAAGTGGCATCTTACTGGGTACCGGCGGTGGATTAGTAGTCCGACCGGTTCCGTACTACTGCTAGTGTTATTGGCTCTCGTTGGTGATTACTCCTCACGAGGTGTATTTGCAGCCAGCCCTCTACCCGACCAAAGTGATGTGCTCTACCACGCCGCCAGTGTGTCCTCGATCGCCGCTACGCGGGACGTAGACAGCACTTACTTCCTGCCGAATACAACCGTCCCAACGCACTACTCAATATCGCTGCGCACCGATATCCACAACGATGTGCGAACGTTCAGTGCAATCACGCGCATCTATCTGACCGTGCTGGCACCTACCGATCTGATCGTAATGCATGTGCAGGAGCTCAACATCGCAAGTGTGGCCCTGTATCGGATTGCTTCTACCGGGGGCAATGAAATCTGGATCGATTCACCGACGTACATGATCGATATCGTCCGGGAGCACGTTACGTTCCGCACGGCCGGCATGCTGCCGCTCGGCAATTACGCGCTAGAGGTCGCGTACACTGGTTCGATGCGCAACTACCAGAGCGGTTACCTGGTGTCGCGCTATCGAAACGAGGCGAACGAGTGGCGCTCGGTGGGAACGACCCACTTCCAGGCGACGCTTGCCCG]
consensusID : consensus_1709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGGCTTACAGAATGGTTAAGTGGCATCTTACTGGGTACCGGCGGTGGATTAGTAGTCCGACCGGTTCCGTACTACTGCTAGTGTTATTGGCTCTCGTTGGTGATTACTCCTCACGAGGTGTATTTGCAGCCAGCCCTCTACCCGACCAAAGTGATGTGCTCTACCACGCCGCCAGTGTGTCCTCGATCGCCGCTACGCGGGACGTAGACAGCACTTACTTCCTGCCGAATACAACCGTCCCAACGCACTACTCAATATCGCTGCGCACCGATATCCACAACGATGTGCGAACGTTCAGTGCAATCACGCGCATCTATCTGACCGTGCTGGCACCTACCGATCTGATCGTAATGCATGTGCAGGAGCTCAACATCGCAAGTGTGGCCCTGTATCGGATTGCTTCTACCGGGGGCAATGAAATCTGGATCGATTCACCGACGTACATGATCGATATCGTCCGGGAGCACGTTACGTTCCGCACGGCCGGCATGCTGCCGCTCGGCAATTACGCGCTAGAGGTCGCGTACACTGGTTCGATGCGCAACTACCAGAGCGGGTACCTG]
[+] EMBL BM602632 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGCTTACAGAATGGTTAAGTGGCATCTTACTGGGTACCGGCGGTGGATTAGTAGTCCGACCGGTTCCGTACTACTGCTAGTGTTATTGGCTCTCGTTGGTGATTACTCCTCACGAGGTGTATTTGCAGCCAGCCCTCTACCCGACCAAAGTGATGTGCTCTACCACGCCGCCAGTGTGTCCTCGATCGCCGCTACGCGGGACGTAGACAGCACTTACTTCCTGCCGAATACAACCGTCCCAACGCACTACTCAATATCGCTGCGCACCGATATCCACAACGATGTGCGAACGTTCAGTGCAATCACGCGCATCTATCTGACCGTGCTGGCACCTACCGATCTGATCGTAATGCATGTGCAGGAGCTCAACATCGCAAGTGTGGCCCTGTATCGGATTGCTTCTACCGGGGGCAATGAAATCTGGATCGATTCACCGACGTACATGATCGATATCGTCCGGGAGCACGTTACGTTCCGCACGGCCGGCATGCTGCCGCTCGGCAATTACGCGCTAGAGGTCGCGTACACTGGTTCGATGCGCAACTACCAGAGCGGGTACCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1709#0 -----------------CCGGTTTCGACGGCTTACAGAATGGTTAAGTGGCATCTTACTG 43
consensus_1709#1 CCGCGGACGCGTGGGCGGACGCGTGGGCGGCTTACAGAATGGTTAAGTGGCATCTTACTG 60
* * * *********************************
consensus_1709#0 GGTACCGGCGGTGGATTAGTAGTCCGACCGGTTCCGTACTACTGCTAGTGTTATTGGCTC 103
consensus_1709#1 GGTACCGGCGGTGGATTAGTAGTCCGACCGGTTCCGTACTACTGCTAGTGTTATTGGCTC 120
************************************************************
consensus_1709#0 TCGTTGGTGATTACTCCTCACGAGGTGTATTTGCAGCCAGCCCTCTACCCGACCAAAGTG 163
consensus_1709#1 TCGTTGGTGATTACTCCTCACGAGGTGTATTTGCAGCCAGCCCTCTACCCGACCAAAGTG 180
************************************************************
consensus_1709#0 ATGTGCTCTACCACGCCGCCAGTGTGTCCTCGATCGCCGCTACGCGGGACGTAGACAGCA 223
consensus_1709#1 ATGTGCTCTACCACGCCGCCAGTGTGTCCTCGATCGCCGCTACGCGGGACGTAGACAGCA 240
************************************************************
consensus_1709#0 CTTACTTCCTGCCGAATACAACCGTCCCAACGCACTACTCAATATCGCTGCGCACCGATA 283
consensus_1709#1 CTTACTTCCTGCCGAATACAACCGTCCCAACGCACTACTCAATATCGCTGCGCACCGATA 300
************************************************************
consensus_1709#0 TCCACAACGATGTGCGAACGTTCAGTGCAATCACGCGCATCTATCTGACCGTGCTGGCAC 343
consensus_1709#1 TCCACAACGATGTGCGAACGTTCAGTGCAATCACGCGCATCTATCTGACCGTGCTGGCAC 360
************************************************************
consensus_1709#0 CTACCGATCTGATCGTAATGCATGTGCAGGAGCTCAACATCGCAAGTGTGGCCCTGTATC 403
consensus_1709#1 CTACCGATCTGATCGTAATGCATGTGCAGGAGCTCAACATCGCAAGTGTGGCCCTGTATC 420
************************************************************
consensus_1709#0 GGATTGCTTCTACCGGGGGCAATGAAATCTGGATCGATTCACCGACGTACATGATCGATA 463
consensus_1709#1 GGATTGCTTCTACCGGGGGCAATGAAATCTGGATCGATTCACCGACGTACATGATCGATA 480
************************************************************
consensus_1709#0 TCGTCCGGGAGCACGTTACGTTCCGCACGGCCGGCATGCTGCCGCTCGGCAATTACGCGC 523
consensus_1709#1 TCGTCCGGGAGCACGTTACGTTCCGCACGGCCGGCATGCTGCCGCTCGGCAATTACGCGC 540
************************************************************
consensus_1709#0 TAGAGGTCGCGTACACTGGTTCGATGCGCAACTACCAGAGCGGTTACCTGGTGTCGCGCT 583
consensus_1709#1 TAGAGGTCGCGTACACTGGTTCGATGCGCAACTACCAGAGCGGGTACCTG---------- 590
******************************************* ******
consensus_1709#0 ATCGAAACGAGGCGAACGAGTGGCGCTCGGTGGGAACGACCCACTTCCAGGCGACGCTTG 643
consensus_1709#1 ------------------------------------------------------------
consensus_1709#0 CCCG 647
consensus_1709#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||