These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1751#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [GCTCAAGCAGATCGCCCCNAGGTTTATATCGCGTGGAAGAGTGGCCATCTGGTTTCGATGTGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTTGCTTGCTGAAAACGACGATCCCTACCACTTGTGCTGAAGAAACACCTGTACCGTGGACCATCGATACGCGTAGGAATAGCTCAATCACCTGGCGTGGCAAGATAGGAATAAACATTCATTACTANAGCTGCGGATTTGGTGGAGTACCACGGTTATACTNACAGGGATAATTTTCTACGGGGGAAAACCCGGGGGAGATTAAAAACTNTNAACGTTCGTTATAACTATCGACTCCACACCTNGGACNAAAACCCCCCCAACCTAACCCGGCCAACCTAATTCTTGGGTAAACCTNGGATNGGCGCANTNATTAATTCCAAAAACCCAATTCCAGCGGAACACAGAATNTAACTATGGACAAATTTGGGGAAAAACAGGTNAGGCACACGNNAACNACTCGCTNGCGCANACACCAAGCGGGCTNTCGAAAGACCCCCCCGGGTATNCCTACAACAACNACNTTCAGGTGCGCTGGGCCNCTTCGCAANTTANACACACTAACACNCAACTNATACCAACCACNNGGTTGAGGAANTCAGGGTATAGGCCTCCAAANTCTNCTNGGAACAACACCGNCACACCTCAGGAACCCTCTCNGGGCGNACCCAGAAANACGATCGGGTATGAGNCACACNCGACNTCAACGCATCGAACAACCCAGGACACCATCAGAAGCGNTCGGTGGCTCA] [+] EMBL AL693900 [GCTCAAGCAGATCGCCCCNAGGTTTATATCGCGTGGAAGAGTGGCCATCTGGTTTCGATGTGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTTGCTTGCTGAAAACGACGATCCCTACCACTTGTGCTGAAGAAACACCTGTACCGTGGACCATCGATACGCGTAGGAATAGCTCAATCACCTGGCGTGGCAAGATAGGAATAAACATTCATTACTANAGCTGCGGATTTGGTGGAGTACCACGGTTATACTNACAGGGATAATTTTCTACGGGGGAAAACCCGGGGGAGATTAAAAACTNTNAACGTTCGTTATAACTATCGACTCCACACCTNGGACNAAAACCCCCCCAACCTAACCCGGCCAACCTAATTCTTGGGTAAACCTNGGATNGGCGCANTNATTAATTCCAAAAACCCAATTCCAGCGGAACACAGAATNTAACTATGGACAAATTTGGGGAAAAACAGGTNAGGCACACGNNAACNACTCGCTNGCGCANACACCAAGCGGGCTNTCGAAAGACCCCCCCGGGTATNCCTACAACAACNACNTTCAGGTGCGCTGGGCCNCTTCGCAANTTANACACACTAACACNCAACTNATACCAACCACNNGGTTGAGGAANTCAGGGTATAGGCCTCCAAANTCTNCTNGGAACAACACCGNCACACCTCAGGAACCCTCTCNGGGCGNACCCAGAAANACGATCGGGTATGAGNCACACNCGACNTCAACGCATCGAACAACCCAGGACACCATCAGAAGCGNTCGGTGGCTCA] consensusID : consensus_1751#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [AAGAGTGGCCATCTGGTTNCGATGGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTGGCTGCTGAAAACGACGATCCCTCCACTTGGCTGAAGAAACACCTGTCCGGGACCATCGATCGCGTAGGAATAGCTCAATCACTGCCGTGGAAGATAGGAATAAAATTTATTATAAGTGCGATTGGTGGAGTACGTTATACTACAGGATATTTTGCGAACGGATAAATTAATGTTATTTTTCAATGAAAACCCACTACCGCAATATTGTACTGTGGATTATCAACCTTCGGAAATTTTGAATGGAAAGTTGAAGAAAGCGGCAAAGGGTGAGCCGGTTAAAATGGTGATGATAATAAATTTTTGTGATGTGCTATTGAACGATGAATTGGAGAGTGTGCAGTTATCAACGCTGGTGGTAACGGAAAGCAATTTGATGCTAACACCAGACATTAGATGGCTCAATGAAAGCTCGGCATATCCGGTTGAACCCAAATATTCTCAACTTATGACGAACATTGTCGAGCTGGAGGATGTGAACGAGTTGTCATGCCGGTTGAACTATATGGACGAACAAGAGGACAAGTATGAAACGTGGCGACTCGATTTTGCT] [+] EMBL BX620683 [AAGAGTGGCCATCTGGTTNCGATGGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTGGCTGCTGAAAACGACGATCCCTCCACTTGGCTGAAGAAACACCTGTCCGGGACCATCGATCGCGTAGGAATAGCTCAATCACTGCCGTGGAAGATAGGAATAAAATTTATTATAAGTGCGATTGGTGGAGTACGTTATACTACAGGATATTTTGCGAACGGATAAATTAATGTTATTTTTCAATGAAAACCCACTACCGCAATATTGTACTGTGGATTATCAACCTTCGGAAATTTTGAATGGAAAGTTGAAGAAAGCGGCAAAGGGTGAGCCGGTTAAAATGGTGATGATAATAAATTTTTGTGATGTGCTATTGAACGATGAATTGGAGAGTGTGCAGTTATCAACGCTGGTGGTAACGGAAAGCAATTTGATGCTAACACCAGACATTAGATGGCTCAATGAAAGCTCGGCATATCCGGTTGAACCCAAATATTCTCAACTTATGACGAACATTGTCGAGCTGGAGGATGTGAACGAGTTGTCATGCCGGTTGAACTATATGGACGAACAAGAGGACAAGTATGAAACGTGGCGACTCGATTTTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1751#0 GCTCAAGCAGATCGCCCCNAGGTTTATATCGCGTGGAAGAGTGGCCATCTGGTTTCGATG 60 consensus_1751#1 ------------------------------------AAGAGTGGCCATCTGGTTNCGATG 24 ****************** ***** consensus_1751#0 TGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTTGCTTGCTGAAAA 120 consensus_1751#1 -GATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTGGCT-GCTGAAAA 82 ********************************************** *** ******** consensus_1751#0 CGACGATCCCTACCACTTGTGCTGAAGAAACACCTGTACCGTGGACCATCGATACGCGTA 180 consensus_1751#1 CGACGATCCCT-CCACTTG-GCTGAAGAAACACCTGT-CCG-GGACCATCGAT-CGCGTA 137 *********** ******* ***************** *** *********** ****** consensus_1751#0 GGAATAGCTCAATCACCTGGCGTGGCAAGATAGGAATAAACATTCATTACTANAGCTGCG 240 consensus_1751#1 GGAATAGCTCAATCAC-TGCCGTGG-AAGATAGGAATAAA-ATTTATTA---TAAGTGCG 191 **************** ** ***** ************** *** **** * **** consensus_1751#0 GATTTGGTGGAGTACCACGGTTATACTNACAGGGATAATTTTCTACGGGGGAAAACCCGG 300 consensus_1751#1 A--TTGGTGGAGTAC----GTTATACTA-CAGG----ATATTTTGCG------AAC---G 231 ************ ******** **** ** ** * ** *** * consensus_1751#0 GGGAGATTAAAAACTNTNAACGTTCGTT-ATAACTATCGACTCCACACCTNGGACNAAAA 359 consensus_1751#1 GATAAATTAA----TGTTATTTTTCAATGAAAACCCACTACCGCA-ATATTGTACTGTGG 286 * * ***** * * * *** * * *** * ** ** * * * ** consensus_1751#0 CCCCCCCAACCTAACCCGGCCAACCTAATTCTTGGGTAAACCTNGGATNGGCGCANTNAT 419 consensus_1751#1 ATTATC-AACCT---TCGGAAATTTTGAAT----GGAAAGTTGAAGAAAGCGGCAAAGGG 338 * ***** *** * * * * ** ** ** * *** consensus_1751#0 TAATTCCAAAAACCCAATTCCAGCGGAACACAGAATNTAACTATGGACAAATTTGGGGAA 479 consensus_1751#1 TGAGCCGGTTAA---AATGGTGATGATA-ATAAATTTTTGTGATGTGCTATTGAACGATG 394 * * * ** *** * * * * * * * *** * * * * consensus_1751#0 AAACAGGTNAGGCACACGNNAACNACTCGCTNGCGCANACACCAAGCGGGCTNTCGAAAG 539 consensus_1751#1 AATTGGAGAGTGTGCA-GTTATCAA--CGCTGGTGGTAACGGAAAGCAATTTGATGCTAA 451 ** * * ** * * * * **** * * ** **** * * * consensus_1751#0 ACCCCCCCGGGTATNCCTACAACAACNACNTTCAGGTGCGCTGGGCCNCTTCGCAANTTA 599 consensus_1751#1 ----CACCAGACATT--------AGATGGCTCAATGAAAGCTCGGCATATCCG---GTTG 496 * ** * ** * * * * *** *** * ** ** consensus_1751#0 NACACACTAACACNCAACTNATACCAACCACNNGGTTGAGGAANTCAGGGTATAGGCCTC 659 consensus_1751#1 AACCCAAATATTCTCAACTTATGACGA--ACATTGTCGAGCTGGAGGATGTGAACGAGTT 554 ** ** * * ***** ** * * ** ** *** ** * * * consensus_1751#0 CAAANTCTNCTNGGAACAACACCGNCACACCTCAGGAACCCTCTCNGGGCGNACCCAGAA 719 consensus_1751#1 GTCATGCCGGTTG-AACTATATGGACGAACAAGAGGACAAGTATGA-----AACGTGGCG 608 * * * * *** * * * * ** **** * * ** * consensus_1751#0 ANACGATCGGGTATGAGNCACACNCGACNTCAACGCATCGAACAACCCAGGACACCATCA 779 consensus_1751#1 ACTCGATTTTGCT----------------------------------------------- 621 * **** * consensus_1751#0 GAAGCGNTCGGTGGCTCA 797 consensus_1751#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||