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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[TCCNAGGTTAAGCAGCTCACTGCGCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGNGCGGCATGTACAGGACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCTTCNCGAGGCTGTACTGTCCGATTTAACGAATCAAACGTTGTGTGATAGCAAGCAAAGCTTCTTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCGAACCGATATGTGCNNTCCCACAAACAGACTGTCGTTGTTACTCAATGTATCACGTCGNGGAACTTCTTTCAAANCTTGCNATGCCAGGAACACAGCANCAGGANAGGGTATACNCCCGAACGTGTTCCGANTAATNCATACGGAGAGAAANAATTGGATGTTAATANGGCGCCGAGTCTATACAAAGGGTNCAACAGGTGCAGAGGATNCCAGAGCACAAGAGGGTAACTTATAGGTAGTAGACGGACACCTAACACGGGACACATACTTTNTANTCACNCACGCGATCCNGGTGTATCACACGAAAGGGGACTNGGTCATTNTGTCCGGCGGACATTCCTTAGGGGGACACAAGAGCGTAATAAACCNGAACAATTCCCCCTTTGCTGCCACAACAGCGGGAGTTGCGGGACACTCAACAGCCTGCTACGCAGGNTGATTACCACCCACACCCCTTGGCTCAACCACACANGCAATTGGGGCTCGGCATAAACACACTCACGGGGTTACCAACAGAAGGTGTTNACAGNGACGTACTCGGGCGGAGTTAAAAACCTAACTTTGGGA]
[+] EMBL AL693925 [TCCNAGGTTAAGCAGCTCACTGCGCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGNGCGGCATGTACAGGACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCTTCNCGAGGCTGTACTGTCCGATTTAACGAATCAAACGTTGTGTGATAGCAAGCAAAGCTTCTTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCGAACCGATATGTGCNNTCCCACAAACAGACTGTCGTTGTTACTCAATGTATCACGTCGNGGAACTTCTTTCAAANCTTGCNATGCCAGGAACACAGCANCAGGANAGGGTATACNCCCGAACGTGTTCCGANTAATNCATACGGAGAGAAANAATTGGATGTTAATANGGCGCCGAGTCTATACAAAGGGTNCAACAGGTGCAGAGGATNCCAGAGCACAAGAGGGTAACTTATAGGTAGTAGACGGACACCTAACACGGGACACATACTTTNTANTCACNCACGCGATCCNGGTGTATCACACGAAAGGGGACTNGGTCATTNTGTCCGGCGGACATTCCTTAGGGGGACACAAGAGCGTAATAAACCNGAACAATTCCCCCTTTGCTGCCACAACAGCGGGAGTTGCGGGACACTCAACAGCCTGCTACGCAGGNTGATTACCACCCACACCCCTTGGCTCAACCACACANGCAATTGGGGCTCGGCATAAACACACTCACGGGGTTACCAACAGAAGGTGTTNACAGNGACGTACTCGGGCGGAGTTAAAAACCTAACTTTGGGA]
consensusID : consensus_1758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[CCGAGAACAGCAACGGTGTGTGGTAAGCCTTCCGAAGGAAGCTGTTACTCAAGAGTGGACGAGGATGGATATTTAATTCGTGGCTGCTTGTCAGATATTCTGGAGTCAGCGTTGAAAATGAGCTGCGAAAAAGGAGACGGTGATTGTGTTGCTTGCGCTGGACCGAAATGTAATGCGCAGTTTCTTCCGAAGAACACGCTTAATTGTGTACAGTGTGGTTCCCGGGAGCAGCTCAACTGCCCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGGCGGCATGTACAGGACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCTTCAGCGAGGCTGTCTGTCCGATTTAACGAATCAAACGTTGTGTGATGCAAGCAAAGCTTCTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCAACCGATATGTGCATCCCACAAACAGACTGTCGTGTTATCAATGTAGTAGTGGGAATTCTTTAAACTGCGATGCAGAACAGCAACAGGAAGGGTTTTTGAAGTGTCGATATCATACGGAGAAGAATGGATGTTATGCCCGAGTCTATCAAGGTCAAGTCGTT]
[+] EMBL BM590134 [CCGAGAACAGCAACGGTGTGTGGTAAGCCTTCCGAAGGAAGCTGTTACTCAAGAGTGGACGAGGATGGATATTTAATTCGTGGCTGCTTGTCAGATATTCTGGAGTCAGCGTTGAAAATGAGCTGCGAAAAAGGAGACGGTGATTGTGTTGCTTGCGCTGGACCGAAATGTAATGCGCAGTTTCTTCCGAAGAACACGCTTAATTGTGTACAGTGTGGTTCCCGGGAGCAGCTCAACTGCCCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGGCGGCATGTACAGGACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCTTCAGCGAGGCTGTCTGTCCGATTTAACGAATCAAACGTTGTGTGATGCAAGCAAAGCTTCTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCAACCGATATGTGCATCCCACAAACAGACTGTCGTGTTATCAATGTAGTAGTGGGAATTCTTTAAACTGCGATGCAGAACAGCAACAGGAAGGGTTTTTGAAGTGTCGATATCATACGGAGAAGAATGGATGTTATGCCCGAGTCTATCAAGGTCAAGTCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1758#0 TCCNAGGTTAAGCAGCTCACTGCGCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATT 60
consensus_1758#1 ----------------------------------------------CCGAGAACAGCAAC 14
* * * *** *
consensus_1758#0 GCAGNGCGGCATGTACAG-GACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCT 119
consensus_1758#1 GGTGTGTGGTAAGCCTTCCGAAGGAAGCTGTTACTCAAGAGTGGACGAGGATGGATATTT 74
* * * ** * * ** * * ***** * ** ** ****** * *
consensus_1758#0 T-CNCGAGGCTGTACTGTCCGATTTAACGAATCAAACGTTGTGTGATAGCAA-GCAAAGC 177
consensus_1758#1 AATTCGTGGCTGC-TTGTCAGATATTCTGGAGTCAGCGTTGAAAATGAGCTGCGAAAAAG 133
** ***** **** *** * * * * ***** *** * ***
consensus_1758#0 TTCTTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCGAACCGATATGTGCNNTCCCAC 237
consensus_1758#1 GAGACGGTGATTGTGTTGCTTGCGCTGG-----ACCGAAATGTAATGCGCAGTTTCTTCC 188
* ** **** * *** *** ** * * ** * ** *
consensus_1758#0 AAACAGACTGTCGTTGTTACTCAATGTATCACGTCGNGGAACTTCTTTCAAANCTTGCNA 297
consensus_1758#1 GAAGA-ACACGCTTAATTGTGTACAGTGTGGTTCCCGGGAGCAGCTCAACTGCCCT-CAA 246
** * ** * * ** * ** * * *** * ** * * * *
consensus_1758#0 TGCCAGGAACACAGCANCAGGANAGGGTATACNCCCGAACGTGTTCCGANTAATNCAT-- 355
consensus_1758#1 GAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGGCGGCATGTACAGGACGATCGTTGT 306
** * * *** **** * *** * * ** *
consensus_1758#0 -ACGGAGAGAAANAATTGGATGTTAATANGGCGCCGAGTCTATACAAAGGGTNCAACAGG 414
consensus_1758#1 TATGTACGAACCAACACCGATGGAAGTCTT-CAGCGAGGCTGTCTGTCCGATTTAACGAA 365
* * * * * **** * * * **** ** * * * ***
consensus_1758#0 TGCAGAGGATNCCAGAGCACAAGAGGGTAACTTATAGGTAGTAGACGGACACCTAACACG 474
consensus_1758#1 T-CAAACGTTGTGTGA-TGCAAGCAA--AGCTTCTGAGGACTG---------------TG 406
* ** * * * ** **** * *** * * * * *
consensus_1758#0 GGACACATACTTTNTANTCACN-CACGCGATCCNGGTGTATCACACGAAAGGGGACTNGG 533
consensus_1758#1 AAACATGCAGTG-GTAGTGACTGCAACCGATATGTGCATCCCACAAACAGACTGTCGTGT 465
*** * * ** * ** ** **** * * **** * * * *
consensus_1758#0 TCATTNTGTC-CGGCGGACATTCCTTAGG--GGGACACAAGAGCGTAATAAACCNGAACA 590
consensus_1758#1 TATCAATGTAGTAGTGGGAATTCTTTAAACTGCGATGCAGAACAGCAACAGGA-AGGGTT 524
* *** * ** **** *** * ** ** * * ** * *
consensus_1758#0 ATTCCCCCTTTGCTGCCACAACAGCGGGAGTTGCGGGACACTCAACAGCCTGCTACG--C 648
consensus_1758#1 TTTGAAGTGTCGATATCATA-CGGAGAAGAATGGATGTTATGCCCGAGTCTATCAAGGTC 583
** * * * ** * * * * ** * * * ** ** * * *
consensus_1758#0 AGGNTGATTACCACCCACACCCCTTGGCTCAACCACACANGCAATTGGGGCTCGGCATAA 708
consensus_1758#1 AAGTCGTT---------------------------------------------------- 591
* * * *
consensus_1758#0 ACACACTCACGGGGTTACCAACAGAAGGTGTTNACAGNGACGTACTCGGGCGGAGTTAAA 768
consensus_1758#1 ------------------------------------------------------------
consensus_1758#0 AACCTAACTTTGGGA 783
consensus_1758#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||